KEGG   Vicugna pacos (alpaca): 102540600
Entry
102540600         CDS       T08098                                 
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
vpc  Vicugna pacos (alpaca)
Pathway
vpc03013  Nucleocytoplasmic transport
vpc03015  mRNA surveillance pathway
vpc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vpc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102540600 (DDX39B)
  09122 Translation
   03013 Nucleocytoplasmic transport
    102540600 (DDX39B)
   03015 mRNA surveillance pathway
    102540600 (DDX39B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vpc03019]
    102540600 (DDX39B)
   03041 Spliceosome [BR:vpc03041]
    102540600 (DDX39B)
Enzymes [BR:vpc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     102540600 (DDX39B)
Messenger RNA biogenesis [BR:vpc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     102540600 (DDX39B)
Spliceosome [BR:vpc03041]
 Complex C
  Other components
   EJC/TREX
    102540600 (DDX39B)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102540600 (DDX39B)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2
Other DBs
NCBI-GeneID: 102540600
NCBI-ProteinID: XP_006215372
UniProt: A0A6I9IPC1
LinkDB
Position
20
AA seq 428 aa
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcagagaacgatgtggacaatgagctcttagactatgaagacgatgaggtggaaaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctacgtc
tccattcacagctctggctttcgcgacttcctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagttcagcatgaatgcatccctcaggccatc
ctgggaatggatgtcctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacaactggagccagttactgggcaggtgtctgtactggtgatgtgt
cacactcgggagttggctttccagatcagcaaggagtatgagcgcttctctaaatacatg
cccaacgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaggatgaagaggta
ctgaagaagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaaactctttgac
cttctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgc
atcgccttggcccagcttctggtggagcagaacttcccagccattgccatccaccgtggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggccaccaacctgtttggccgaggcatggacatcgagcgggtgaacattgccttt
aactacgacatgcctgaagattccgacacctacctgcatcgggtggccagagctggccgg
tttggcaccaagggcttggccattacatttgtgtcagatgagaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacgcggtag

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