Vicugna pacos (alpaca): 102540827
Help
Entry
102540827 CDS
T08098
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03030
DNA replication
vpc03410
Base excision repair
vpc03420
Nucleotide excision repair
vpc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102540827 (RFC1)
03410 Base excision repair
102540827 (RFC1)
03420 Nucleotide excision repair
102540827 (RFC1)
03430 Mismatch repair
102540827 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpc03032
]
102540827 (RFC1)
03400 DNA repair and recombination proteins [BR:
vpc03400
]
102540827 (RFC1)
DNA replication proteins [BR:
vpc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
102540827 (RFC1)
DNA repair and recombination proteins [BR:
vpc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
102540827 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
Rad17
AAA_22
RuvB_N
BRCT_2
AAA_5
AAA_14
AAA_17
AAA_33
AAA_16
AAA_18
AAA_7
AAA_30
Zeta_toxin
nSTAND3
RNA_helicase
NTPase_1
TIP49
NPHP3_N
SKI
AAA_19
Motif
Other DBs
NCBI-GeneID:
102540827
NCBI-ProteinID:
XP_006209815
UniProt:
A0A6I9IDR1
LinkDB
All DBs
Position
2
AA seq
1146 aa
AA seq
DB search
MDIRKFFGVVPSGKKLVSETVKKNEKKSAEETLKAKRGIKEIKVNSSCKDDDFRQKQPNK
KKRIIYDSDSESEETMQVKNTKKQPEKLPLTSKPAKIRHQDPVTYISETDEEDDFVCKKA
ASKSKENGGSTNSYLGASNMKKNEEYTKTKNKPLSPIKLTPTSVLDYFGTGSVQRSDKKM
VASRRKEPPQNADDSRLKDEAIARQLQLDEDAELERQLHEDEEFARTLAMLDEEPKSKKA
LKDPEEREMFSSVQANLCKAVKPKYPHKVKAEQFSDERKNCSPKKRTKCESSKESQHSRS
SAHKTGETSSPKASSKLAALKKREECSYKKTEPMGSKRKENAIELKETRTPKKIKSSPAK
QESISPEDSEKRRSNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIER
DEAKSLIERYGGKVTGNVSKKTNYLVRGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTMP
GKKSKYEIAAEAEMKKEKSKLERTPQKNDRGKRKISPTKKESESKKCQLTPQRESSIKSI
KKETSVFRRGLDFKEQVAEETNGDSRARNLADDSSENKVENLLWVDKYKPTSLKTIIGQQ
GDQSCANKLLRWLQNWHKSPSEDKKCAAKVGKFAGKDDGSSFKAALLSGPPGVGKTTTAS
LVCQELGYSYVELNASDTRSKNSLKEIVAESLNNTSIRGFCSTGAVHSVSMKHALLMDEV
DGMAGSEDRGGIQELIALIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKG
AMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKK
DIKLGPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPIAAGGDMK
KHLMLLSRAADSICDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGYMTQFPTFPSW
LGRHSSMGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSRIRDALVQPLTSQGIEGVQDVV
ALMDAYYLMKEDFENIMEISSWGGRPSPFSKLDPKVKAAFTRAYNKEVHLTPYSLQAVKT
HRLSTGPALDSEYNEELNEDDSQSDEKDQDTLETDAMIKKKTKSSKPSKSEKDKESRKGK
GKNSKK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggatattcggaagttctttggggttgtaccaagtggaaagaaacttgtaagtgaaaca
gtaaagaagaatgagaaaaagtctgctgaagaaactttaaaagcaaagagaggaataaag
gaaatcaaggtaaatagttcctgtaaagatgatgacttcagacagaagcaaccaaacaag
aaaaagaggatcatttatgattcagattcagaatcagaggaaacaatgcaggtaaaaaac
accaaaaagcaaccagaaaaattgccactgacttctaaacctgctaaaattagacaccag
gatcctgttacatacatttcagaaacagatgaagaagatgactttgtgtgtaagaaggca
gcctccaaatcaaaagagaatggaggatctacaaatagttaccttggagcatcaaacatg
aaaaagaatgaagaatacactaagactaagaataagcctttatcaccgataaaacttact
cctacatcagtgcttgattattttggaactggaagtgtccaaagatccgataagaagatg
gtggcaagcagaagaaaagagcctccacaaaatgcagatgattccagattaaaagatgaa
gctattgccaggcaattgcaacttgacgaagatgcagagctggagagacaactgcatgaa
gatgaagagtttgccagaacattagccatgttggatgaagaacccaagtccaaaaaggct
ctaaaggacccagaagagagagagatgttttcatctgtacaggccaatttatgtaaagca
gtcaaacctaaatatcctcataaagtaaaagcagaacaattttcagatgaaagaaagaat
tgcagtcctaagaagcgaactaaatgtgaaagttcaaaagaatctcaacattccaggtca
tcagctcataaaacaggagaaacttcttctccaaaagccagttccaagctggcagctttg
aaaaaaagagaagagtgttcttataaaaaaacagagcctatgggctcaaaaagaaaagaa
aatgccattgaactgaaagagaccagaactcctaagaaaatcaaaagttctccagctaaa
caagagtctataagtcctgaagattctgaaaagagacgcagtaattatcaagcttatcgg
agctacttaaatcgagaaggtcccaaagccctgggctccaaagaaataccaaagggagct
gaaaattgcttggaaggccttacgtttgtaatcacaggagtgctggagtccattgaacga
gacgaggccaagtctctaattgagcgttacgggggaaaagtaacaggaaatgtcagcaag
aagacaaattaccttgtcaggggtcgcgacagtggtcagtccaagagtgataaggcagcc
gccttgggaacaaaaattattgatgaagatggcctattgaatctgattcgaaccatgcca
gggaagaagtccaagtatgaaatagcagctgaagctgagatgaagaaagaaaaatccaaa
ttggaaagaacaccccaaaaaaatgaccgaggaaaaagaaaaattagtccaactaagaag
gaatcagaatctaaaaagtgccagctgactccccagagagaaagctctataaagtcaata
aaaaaagaaacaagtgtgtttcggagaggcctggacttcaaggagcaggtggctgaggag
acaaatggtgacagccgggctaggaatttggctgatgacagcagtgaaaacaaagtggaa
aatttgctctgggtggataaatataagccaacctcgctcaagaccataattggacagcaa
ggtgaccagagctgtgccaacaaactcctacgctggctccaaaactggcacaagagtcca
tcagaagataagaaatgcgcagcaaaggttggtaaatttgcgggcaaagatgatggctcc
agttttaaagctgcattgctctcaggccctccaggtgttggcaaaacaaccacagcttct
ctagtttgtcaggaattgggatatagctacgtggaactgaatgcaagtgacactcggagt
aagaacagtttgaaggagattgttgctgaatcgctgaataataccagcatcagaggcttt
tgttcaactggagcagtccactcagtaagcatgaaacacgctctcctcatggatgaggtc
gatggcatggcaggcagtgaggacaggggaggaattcaggaattaattgccctaataaaa
catacaaaaattcccattatttgtatgtgcaatgatagaaatcatcccaagattcgctct
ttggttcattattgttttgatcttcgttttcaaagacctcgggttgagcagattaagggt
gctatgatgtctattgcatttaaagagggtttaaagatccctcctccagctatgaatgaa
ataattttgggagccaatcaagatatcagacaggttttacacaatctgagtatgtggtgt
gcacgaagtaaggcactaacctacgaccaggccaaggctgattctcacagagccaaaaag
gatatcaaactgggcccatttgatgttgcccggaaagtgtttgcagctggagaggagact
gctcatatgtcacttatggacaaatcagatctcttttttcatgattattcaatagcaccc
ctctttgtccaggagaactacatacacgtgaagcccatagctgcagggggtgacatgaaa
aagcacttgatgcttttaagcagagcagcagatagcatatgtgatggggacctagtggac
cggcagatccggaataagcagaactggagtcttctgcccacacaggccatttatgccagt
gttcttcctggagagttaatgagagggtacatgacccagtttcccacctttccaagctgg
ttggggaggcactcatctatgggcaaacatgatcgtattgttcaggacctagcactgcat
atgagtctcagaacttactccagcaaaaggactgtaaacatggattatctgtcacgtata
agggatgcacttgtacagcccttgacctcacaagggatagaaggagtacaggatgttgtt
gctcttatggacgcatattatttgatgaaagaagactttgagaatatcatggaaattagc
agctggggaggcagacctagtcccttctccaagctggatcccaaggtgaaggcagccttc
acaagagcttacaataaggaagtccaccttactccatattcacttcaggcagtaaagaca
cacagactcagcacaggcccagcactggattctgaatacaacgaagagttaaatgaagat
gactctcaatctgatgagaaagaccaggacactttggaaactgatgctatgatcaagaaa
aagacaaaatcttcaaagccttcaaaatcagaaaaagataaggaatccagaaaaggaaaa
ggaaaaaattcaaagaagtga
DBGET
integrated database retrieval system
