Vicugna pacos (alpaca): 102541016
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Entry
102541016 CDS
T08098
Symbol
TOPBP1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102541016 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpc03032
]
102541016 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
vpc03400
]
102541016 (TOPBP1)
DNA replication proteins [BR:
vpc03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
102541016 (TOPBP1)
DNA repair and recombination proteins [BR:
vpc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102541016 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
102541016
NCBI-ProteinID:
XP_006214624
UniProt:
A0A6I9IN94
LinkDB
All DBs
Position
1
AA seq
1524 aa
AA seq
DB search
MSKNDKEPFFVKFLKSSDNSECFFKALESIKEFQSEEYLQIITEEEALKIKENDRSLYIC
DPFSGIVFDHLRKLGCRIVGPQVVIFCMHHQRCVPRAEHPVYNMVMSDVTISCTSLEKDK
REEVHKYVQMMGGRVYRDLNISVTHLIAGEVGSKKYLVAANLRKPILLPSWIKTLWEKSQ
EKKIARYTDINMEDFKCPVFLGCIICVTGLCGLDRKAVQRLTVKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTTQWFFDSVEKGFCQDESMYKTEPRPETKSMPDTSTPT
GQINTIDSRTLSDVSHISNINASCINESIYNSVLNSKVEPTFENLENLDVSAFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWDKSTHRP
HVVGAQWLLECFSKGYMLPEEQYIHANYRPVEIPVSDQPEGKAALLKRKNSTFSKKDFAP
NEKHEQADEDLLSQYVDNNPTVVEAVKSEAEPFNDSTHVEPCNDSTHVSLQEENQSSVSH
CLPDASTITEEGLFRQRSFLVLGFSNENETSIATIIRENAGKVVSLQSRTVADYAVVPLL
GCEVRATVGEVVTNTWLVTCIEYQTLTDPKSNPLFTPVPVMAGMTPLEKCVVSFSQCVGA
EKDSLTFLANRLGARVQEFFVRKSNAKKGMFASTHLILKEPGGSKYEAAKKWKLPAVTIA
WLLETARMGKRANESHFLIENSHKEEQGLETETTKGVNLSPDTPEHPVTHLETHRKTAVT
PLDMNRFQSKAFHAVISQHSGQASVSPAVGQPLQKEPSLHLDTPSKFLSKDKLFKPSFDV
KDALAALETPGGASQQKRKLSTPLSEXIVRNLKLALANSSRNAVALSASPQLKDAQSEKE
EAPKPLHKVVVCVSKKLSKKQSELNAIAASLGADYRWSFDETVTHFIYQGRPNDTNREYK
SVKERGIHVVSEHWLLECAQEYKHLPESLYPHTYNPKMSLDISAVQDGRLCNNRLLSADS
TTKDDEPDDLPLEENDVDSMTTNNKESATSNGYGRNECKGALTQTLEMRENFQKQLQEIM
SATSIVKPQGQRASLSRSGCNSASSTPDSTRSARSGRSRVLEALRQSRQTVPDVNTEPSQ
NEQIIWDDPTAREERARLASNLQWPSCPTQYSELQVDVKQLEDSPFQKPLHDSKIAEQAV
CDPGNTCVTEEAAKHPIAEEVETPMKDSHLIPTPQAPSIAFPLANPPVAPHPREEIITIE
ETNEDLKKQYTFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPNCTHIVVGHPLRNEKY
LGSVAAGKWVLHRSYLEACRTAGRFVPEEDYEWGSSSILDVLTGINAQQRKLALAAMRWR
KKIQQRQESGIVEGAFSGWKVILHVDQSREAGFKRLLQSGGAKVLPGHSVSLFKEATHLF
SDFNKLKQGDSGVNIAEAAAQNVRCLKTEYIADYLMQESPPQVENYCLPEAVSLLQNNKE
PGPGSSQKRKAPTEKNKIKRPRVQ
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaatgacaaagaaccgttttttgtgaagtttttaaagtcgtcagacaattcc
gaatgtttttttaaagctcttgagtcaataaaagagttccagtcagaagaatatcttcag
attattacagaagaagaggcattgaagataaaggagaatgatagatcactttatatctgt
gacccttttagtggcattgtctttgatcatctcagaaagcttggctgcagaattgtcggt
cctcaagtagtcatattttgtatgcaccaccagcgatgtgtcccaagagctgagcatcca
gtttataatatggttatgtctgatgtaaccatatcttgtacaagcttggaaaaagacaaa
agggaagaagttcataaatatgtacaaatgatgggtggacgtgtatacagagaccttaac
atatcagtaactcaccttattgcaggagaagttggtagcaaaaaatacctagttgctgcg
aacctaaggaaacctattttgcttccttcttggataaaaacactttgggagaagtcacag
gagaaaaaaatagctaggtataccgatataaacatggaagacttcaagtgtcctgttttt
cttggttgcataatctgtgtgactggcttatgtggcttagacaggaaagcagtacagcga
ctcacagttaagcatggaggtcaatacatgggacaattaaaaatgaatgaatgtacacac
ctcattgtacaagaaccaaaaggtcaaaaatatgaatgtgccaaaagatggaatgtacac
tgtgtgaccacacagtggttttttgacagtgttgagaaaggtttttgtcaggatgaatct
atgtacaagaccgagcctagaccagaaacaaagagtatgcctgatacttcaactcctact
ggccagatcaacacaattgatagtcgtactctttcagatgtcagccatatttccaacatc
aatgcgagttgcataaatgaatctatatataattcagttcttaatagcaaagtggagcct
acttttgaaaatctggaaaatctggatgtcagtgcatttcaagcacctgaagatttattg
gatggttgtcggatatatctttgcggttttagtggccgaaagctagataaactaagaagg
cttattaacagtggaggtggagttcgttttaatcagctaaatgaagatgtaactcatgtt
attgtgggagattatgatgacgaattgaagcagttttgggataaatcaacccacaggcct
catgtggtgggagcacagtggttgctagagtgttttagtaaaggttatatgcttcctgaa
gagcaatatatccatgctaactaccggccagtggaaattccagtttcagatcaacctgaa
ggtaaagcagcccttttaaaaagaaagaacagcaccttctctaagaaagactttgctcct
aatgaaaagcatgaacaagctgatgaagatctgctctctcaatacgtggataataaccca
acagtagttgaagctgtgaagtctgaagcggagccctttaatgattctactcatgttgag
ccctgtaatgattctactcatgtttctctgcaagaagaaaatcagtcttctgtcagtcat
tgcctccctgatgcttctacaattactgaagaaggtttatttaggcaaaggagtttcctt
gttttgggttttagtaatgaaaatgaaactagtattgcaactatcataagagaaaatgct
ggaaaagttgtatctcttcagagcagaactgttgctgattatgctgtggttcctctgctg
gggtgtgaagtacgggcaactgtgggagaagttgttaccaatacttggctggtaacttgt
atagaatatcagactttaactgatccaaagtcaaatcctctcttcacgccagtcccagta
atggcaggaatgactcctttagagaagtgtgttgtttcattcagccaatgtgtaggagca
gaaaaagattcattgacattcttagcaaatcgccttggagcaagggttcaagaattcttc
gttcgcaaatccaatgcaaagaaaggcatgtttgccagtacacatcttatattgaaagaa
ccaggtggttctaaatatgaagctgccaagaagtggaaattgccagcagtcactatagct
tggctgttggagactgctagaatggggaagagagcaaatgaaagccattttctgattgaa
aattcacataaagaagagcaaggtttggaaactgaaacaacaaaaggggtgaatctgagt
ccagatactccagagcatcctgtcacccacctggaaactcacagaaaaacagctgttaca
cctttagatatgaaccgctttcagagtaaagctttccatgccgtgatttcacagcactct
ggacaggcttcagtctcccctgcagtgggacagccacttcagaaggagccctcattacat
ctggatacaccatcaaaatttctgtccaaggacaaactctttaagccttcctttgatgtg
aaggatgcacttgcagccttggaaactccaggaggtgccagccagcagaagaggaaactg
agtacaccgctctcagaangtattgtcagaaacctgaaacttgctttggcaaatagttct
cgaaatgctgtcgctctttctgccagccctcagctaaaggatgcccaatcagagaaggaa
gaagctccaaagccccttcacaaggtggttgtgtgtgtgagtaagaaactcagtaagaag
cagagtgaactaaatgcgattgcagcctctctaggagctgactacaggtggagttttgat
gagacagtgactcatttcatttatcaagggcgaccaaatgacaccaatcgagaatataaa
tctgtaaaagaaagagggatacacgttgtttcagagcactggcttttagaatgtgcccaa
gagtataaacatcttcctgaatctctttatccacatacttataaccccaaaatgagcttg
gatatcagtgcagtgcaagatggcagactctgtaataatcgactgctctcagctgactca
acaacaaaggacgatgagccagatgatttgcctttagaagaaaatgatgtagacagtatg
accaccaataataaagaatcagcaacatcaaatggatatggaaggaatgaatgtaaagga
gctctgacacagaccttggagatgagagagaacttccaaaagcagctgcaggagataatg
tctgcaacgtcaatagtgaaaccccaagggcagagggcttcgctttcaagaagtggttgt
aacagtgcctcttcaacccctgacagcacgcgctctgcccgcagcggacgaagccgagtc
ttggaggcactgaggcagtctcgtcagacagtacctgatgtcaacacagagccctcccaa
aatgaacagatcatttgggacgaccctacagccagggaggagagagcaaggctcgccagc
aatttgcagtggcctagttgtcccacacagtactctgagcttcaggttgatgtcaaacag
ttggaggattctcctttccagaagcctttacatgattcaaaaattgctgaacaggctgtc
tgtgatcctggaaacacgtgtgtgactgaagaagccgcaaaacacccaatcgctgaagaa
gtggaaactcccatgaaagacagccacttgatccctacaccgcaggctcccagcattgcc
ttccctctggccaacccgcctgtggctccacaccctagagaagagattataacgatagag
gagaccaatgaagatttaaaaaaacagtacacatttcagctgtcatctctgaatcctcaa
gaacgtatcgattattgtcatctgattgaaaaactaggtggattagtgattgagaagcag
tgctttgatcccaactgtacacacattgttgtgggacatccgcttcgaaacgagaagtat
ttaggctcagtggcagctgggaagtgggtgcttcatcgctcctaccttgaagcatgcagg
actgctgggcggttcgtgccggaagaagactatgaatggggaagtagttccatacttgat
gttttgactggaatcaacgcacagcaacgaaaactagcacttgcagcaatgagatggagg
aagaaaatccagcaaagacaagaatcaggcattgtcgagggggcatttagtggatggaaa
gttattttacatgttgatcagtcccgagaagcaggattcaaacgccttcttcagtcagga
ggagcaaaggtgctacctggtcattctgtatctttatttaaagaagctacacatctcttt
tctgactttaataaactgaaacaaggagactcaggagtaaatatagcagaagctgctgcc
cagaacgtgcgttgcttgaaaacagagtacattgctgattatcttatgcaggaatcccct
cctcaagtagaaaattactgtctcccagaagctgtctcacttcttcagaacaataaggaa
cctgggcctggatcctcacaaaagaggaaagctcccacagagaaaaataaaatcaaacga
cctagagtgcagtga
DBGET
integrated database retrieval system
