Vicugna pacos (alpaca): 102541156
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Entry
102541156 CDS
T08098
Symbol
DDX50
Name
(RefSeq) ATP-dependent RNA helicase DDX50 isoform X1
KO
K13183
ATP-dependent RNA helicase DDX50 [EC:
5.6.2.7
]
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102541156 (DDX50)
Enzymes [BR:
vpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102541156 (DDX50)
Spliceosome [BR:
vpc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102541156 (DDX50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-GeneID:
102541156
NCBI-ProteinID:
XP_006212959
UniProt:
A0A6I9IH84
LinkDB
All DBs
Position
11
AA seq
737 aa
AA seq
DB search
MPGKLLWGDIMDLEAPLEETESQRKEKQKSDKRKSRHHYDTDEKSETRENGVADDLDVPK
PKKAKMKEKLNGDTEEGCDRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRMSSLDISTPK
SSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFDPVYEGKDLIAQ
ARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLSV
ACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGF
AEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAAT
TVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHG
DIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTG
RAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYA
AVDFFRPSAQRLIEEKGAVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQD
VSCAWKELNRKLSSNVVSQITRMCLLKGNMGVCFDVPTTESERLQAEWQDSDWILSVPAK
LPEIEEYYDGNTSSNSRQRSGWSSGRSGRSGRSGGRSGGRSGRQSRQGSRSGSRQDGRRR
SGNRNRSRSGGHKRSFD
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcaaactcctctggggggacattatggacctggaggcacccttggaggagacc
gagagccagaggaaggagaagcaaaagagtgataaaagaaagtcaaggcaccattatgac
acagatgagaaatcagaaacaagagaaaatggtgttgcagatgatctggatgttcccaag
cccaaaaaagctaaaatgaaagagaagctaaatggagacactgaagaaggatgtgataga
ctttcagatgaattttctaaatctcataagtcaagaagaaaagatctgtcaaatggagac
attgatgaatatgaaaaaaaatcaaagcgaatgtcatccttagatatttctacccccaaa
tcaagtgataataaactagaagagaccctaacacgtgaacagaaagaaggagccttctcc
aatttccctatttctgaagagactataaaacttctgaaaggtcgaggggtaacatatctc
tttcctattcaagttaagacttttgatcctgtatatgaaggaaaagatttaattgctcaa
gcacggacaggaacaggaaagacattctcttttgccatacccttgattgaaagactccaa
agaaatcaagaaacaattaaaaaaagccgctcaccaaaggtacttgttttggctcctaca
agagaactagcaaaccaagtagccaaagacttcaaagatataactaggaaactcagtgtg
gcatgtttttatggtggaacatcatatcaaagccaaattaatcatattcgaaatggtatt
gacatcttggttgggacccctggtcgtatcaaagaccatctgcagagcggccggttagat
ctttctaaactgcgccacgttgtgcttgatgaagtggatcagatgttagatttaggtttt
gctgaacaagttgaagatattatccatgaatcctacaaaactgattctgaagacaatcct
cagactttacttttttctgcaacttgcccacagtgggtatacaaagttgcaaaaaaatac
atgaaatccagatatgaacaggttgaccttgttgggaaaatgactcaaaaggctgcaact
actgtggaacatttggccatccagtgccattggtctcagaggccagcagttattggagat
gtccttcaagtctatagtgggtctgaaggcagggctattattttctgtgagaccaaaaag
aatgtaactgaaatggccatgaatccgcacataaaacagaatgcccagtgtttacatggg
gacattgcacagtcacaaagagaaattacactgaaaggcttcagagaaggtagttttaaa
gttttggtggcaaccaatgtggctgctcgtggtttggacattcctgaggttgacctggtg
attcagagttcacctccacaggatgttgagtcctatattcatcgctctggacgcacaggt
agagctggccggacagggatttgcatatgtttttatcaaccaagagaaagaggtcaatta
agatatgtggaacaaaaagcaggaattacttttaaacgtgtaggtgttccttctacaatg
gatttagttaaatctaaaagcatggatgccatcaggtctctggcttctgtttcttatgct
gctgttgattttttccgaccatcagctcagagactgatagaagagaaaggggcagtggat
gcattggctgcagcattagctcacatctctggcgcatcaagttttgaaccacgatctttg
atcacctctgataagggttttgtgaccatgactctggaaagcccagaagaaatacaagat
gtcagctgtgcttggaaagaacttaacagaaagctaagtagtaatgttgtgtcccagatt
accagaatgtgcctcctaaaaggaaatatgggtgtttgctttgatgttcccacaactgag
tcagaaaggttacaggcagagtggcaggattcagactggatactctcagtgccagccaag
ttgcctgaaattgaagaatattatgatggaaacacatcttctaattccagacagaggagt
ggctggtcaagtggccgctcgggccggtctggccggtcaggtggtcgatctggtggccgg
tcaggtagacagagtcgacaggggagtcggtcaggaagtcgacaagatggtagaagacga
agtgggaatagaaatcgatcaagaagcgggggccacaaacggagttttgactga
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