Vicugna pacos (alpaca): 102542008
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Entry
102542008 CDS
T08098
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03440
Homologous recombination
vpc03450
Non-homologous end-joining
vpc04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102542008 (RAD50)
03450 Non-homologous end-joining
102542008 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
102542008 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpc03032
]
102542008 (RAD50)
03400 DNA repair and recombination proteins [BR:
vpc03400
]
102542008 (RAD50)
DNA replication proteins [BR:
vpc03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
102542008 (RAD50)
DNA repair and recombination proteins [BR:
vpc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
102542008 (RAD50)
BRCA1-C complex
102542008 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
102542008 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
DUF2703
AAA_29
Motif
Other DBs
NCBI-GeneID:
102542008
NCBI-ProteinID:
XP_006212891
UniProt:
A0A6I9IKM4
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSWIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELVAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQITSKEAQLTSSKEI
VKSYENELDSLEDRLKEIEQNLSKIMRLDNEIKALDSRKRQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLIDCQRELEKLNKESRLLNQEKSELLVEQGRLQLQADRH
QEHIRARDSLIQSLAAQLELDGFERGPFSERQIKNFHKLVRERQEREAETASQLINDFAE
KETLKQKQIDEIRDKKTGLGRIIELKSEILSKKQNELKNVKYELQQLEGSSDRILELDQE
LTKTERELSKAEKNSNIETLKTEVISLQNEKADLDRILRKLDQEMEQLNHHTTTRTQMEM
LTKDKADKDEHIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKNHINNELKRKEEQLSNYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIMP
EEESAKVCLTDVTLMERFQMDLKDVERKIAQQAAKLQGLALDRTVQQVNQEKQEKQHRLD
TVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQS
LHREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKINDIKEKVKNIHRYVKD
IENYIQDGKDDYKKQKENELDKVIAQLSECEKHKEKINNEMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKNEQQKLEEKKENIKRNHGLAIGRQHG
YEEAIIRFKKELQEPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRNTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGSWVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcttggatcgaaaagatgagcattctgggagtgcggagttttggaatagaggacaaa
gataagcaaattattactttcttcagccccctcacaattttggttggacccaatggggct
ggtaagacgaccatcattgaatgtctaaaatatatttgtactggagatttcccccctgga
accaaaggaaatacatttgttcatgatcccaaggtagctcaagaaacggatgttagagct
cagattcgtctgcagtttcgtgatgtgaatggagaacttgtagctgtgcagagatctatg
gtgtgtactcagaaaagcaaaaagacagaatttaaaaccctagaaggagtcattactaga
acaaagcatggcgaaaaagtcagtcttagctccaagtgtgcagaaattgaccgagagatg
ataagttctcttggggtttccaaatctgtgctaaataatgtcattttctgtcaccaagaa
gagtctaattggcctttaagtgaaggaaaggctttgaagcaaaaatttgatgaaattttt
tcagcgacaaggtacattaaagccttggaaacacttcggcaggtacgtcagacacaaggt
cagaaagtaaaggaatgtcaaacagaactaaaatatctgaagcagaataaggaaaaagct
tgtgagattcgtgatcagattactagcaaggaagcccagttaacatcttcaaaggaaatt
gtcaaatcttatgagaatgaacttgattcactggaggatcgtctaaaagaaattgaacaa
aatctctctaaaatcatgagactcgacaatgaaattaaagccttggatagccggaagagg
cagatggaaaaagataatagtgaattggagcagaaaatggaaaaggtttttcaagggact
gatgagcaactaaatgacttatatcacaatcatcagagaacagtaagggagaaagaaagg
agactgatagactgtcagcgtgaactggaaaaattaaataaagaatctaggcttctcaat
caagaaaaatcagaactacttgttgaacagggtcgtctacagctacaggccgatcgtcat
caagaacatattcgagctagagattcattgattcagtctttagcagcacaactagaattg
gatggctttgagcgtggaccattcagtgaaagacagataaaaaattttcacaaacttgtg
agagagaggcaagaaagggaagcagaaaccgccagccaactgataaatgactttgcagaa
aaagagacactgaaacaaaaacagatagatgagataagagataagaaaactggactggga
agaataattgagctaaaatcagaaatcctaagtaagaagcagaatgagctgaaaaatgtg
aagtatgaattacagcagttggaaggatcttcagacaggattcttgaactggaccaggag
ctcacaaaaactgaacgtgagctaagcaaggctgagaaaaacagcaacatagaaactcta
aaaacagaagtaataagccttcaaaatgagaaagcagacttagataggatcctgcgtaaa
ttggaccaggagatggagcagttaaaccatcatacaacaacacgcacccagatggagatg
ctgaccaaagacaaagctgacaaagatgaacatatcagaaaaataaaatctaggcacagt
gatgaattaacttcattgttagggtattttcccaacaaaaaacagctcgaagactggctt
catagtaaatcaaaagaaattaatcagaccagggacagacttgccaaactgaacaaggaa
ctagcttcagctgagcaaaataaaaatcatataaataatgagttaaaaaggaaggaagag
cagttatccaactatgaagacaagctgtttgatgtttgtggtagccaagattttgaaagt
gatttagacaggcttaaagaggaaattgaaaaatcctcaaaacaacgagccatgttggct
ggagccacggcagtttactcccaattcattactcagcttacggatgaaaaccagtcgtgt
tgccctgtctgtcagagggttttccagacagaagccgaattacaagaagtcatcagtgat
ttgcagtctaagctgcggcttgctccagataaactcaagtcaacagaatcagagctaaag
aaaaaagaaaagcggcgtgatgaaatgctgggacttgtgcccatgaggcaaagcataatt
gatttgaaagagaaggaaataccagaattaagaaacaaactgcagaatgtcaatagagac
atacagcgcctaaagaatgacatagaagaacaggaaacactcctgggtacaataatgcct
gaagaggaaagtgctaaagtgtgtctgacagatgttacacttatggagaggtttcagatg
gatcttaaagatgttgaaagaaaaattgcacaacaagcagctaagctacagggactagcc
ttggatagaactgttcagcaagtaaaccaggaaaaacaagaaaaacaacacagattagat
acagtttccagtaagattgaattgaatcgtaagctcatacaggaccagcaggaacagatt
caacacctgaaaagtacaacaaatgaacttaaatcagagaaacttcagatatccactaat
ttacaacgtcgtcagcaactggaggagcagactgtggaattatccactgaagttcagtcc
ttacacagagagataaaggatgctaaagagcaagtaagccctttggaaacaacactggaa
aagttccagcaggagaaagaagaattaatcaacaaaaaaaatacaagcaacaaaatagca
caggataaaataaatgatatcaaagagaaggttaaaaatattcatcgttatgtgaaagac
attgagaattatattcaagatggaaaagatgactataagaagcaaaaagaaaatgaactt
gataaagtaatagctcaactaagtgaatgtgagaaacacaaagagaagattaataatgaa
atgggaatcatgagacaagacattgatacacagaagatacaggaaagatggctacaggat
aaccttactttaagaaaaagaaacgaagaactaaaagaagttgaagaagaaagaaaacaa
catttgaaggaaatgggtcaaatgcaggttttacaaatgaaaaatgaacaacagaaattg
gaagaaaaaaaagaaaatataaaaagaaatcatggtttggcaataggacgacagcatggt
tatgaggaagcaattattcgttttaagaaagaacttcaagaacctcaatttcgggatgct
gaagaaaagtatagggaaatgatgattgttatgagaacaacagagcttgtgaacaaggat
ctggacatttactataagacccttgaccaagcaataatgaaatttcacagtatgaaaatg
gaagaaatcaacaaaattattcgtgacctttggcgaaatacctatcgtggacaagatatt
gaatatatagaaattcgatctgatgccgatgaaaatgtatcagcttctgataaaagacgg
aattataactaccgagtggtgatgctaaagggagacacagccttggatatgcgaggacga
tgcagtgccggacaaaaggtattagcctcactcatcatccgcctggccctggctgaaaca
ttctgcttaaactgtggcatccttgccttggatgagccaacaacaaatcttgaccgagaa
aacatagaatctcttgcgcatgctctggttgagataattaaaagtcgctcacagcagcgt
aacttccagcttctggtaatcactcacgatgaagattttgtggagctcttagggcgttct
gaatatgtggagaaattctacaggattaagaagaacattgatcagtgctcagagattgtg
aaatgcagtgttagctccctaggatcttgggttcattaa
DBGET
integrated database retrieval system
