Vicugna pacos (alpaca): 102542259
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Entry
102542259 CDS
T08098
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102542259 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpc03021
]
102542259 (CPSF3)
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102542259 (CPSF3)
Transcription machinery [BR:
vpc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102542259 (CPSF3)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102542259 (CPSF3)
U7-dependent histone pre-mRNA processing factors
102542259 (CPSF3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
CopK
Motif
Other DBs
NCBI-GeneID:
102542259
NCBI-ProteinID:
XP_006197159
UniProt:
A0A6I9HXK2
LinkDB
All DBs
Position
15
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEEL
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSILSVTVDGKTANINLETRTVECEEGSE
DDESLREMVELAAQRLYEALTPVH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgattcctgcggaggagagtgaccagctgctgatccgaccccttggagctgga
caagaagtaggaagatcatgtattattctggagttcaaaggaagaaaaataatgctggac
tgtgggatccaccctggcctagaaggaatggatgctcttccttatattgatttaattgac
ccagctgagattgatctcctactaattagtcatttccatttggatcactgtggagctttg
ccctggtttctacagaagacaagtttcaagggaagaacatttatgactcatgccacaaaa
gctatttatagatggcttctttcagattatgtcaaagttagtaatatatcagcagacgac
atgctgtatactgagacagatttggaagagagcatggataaaattgagaccatcaacttt
catgaagtgaaggaagttgcaggaatcaagttctggtgttaccacgccggccacgtcctg
ggagcggccatgttcatgattgagatcgcaggtgtaaagcttttgtacactggtgatttc
tcaagacaagaagatagacacttaatggctgctgaaattcctaatattaaacctgatatt
cttatcattgagtctacctatgggacccacatccacgagaagcgggaagagcgagaggcc
agattctgtaacactgttcacgatattgtaaacagagggggcagaggtctcattcctgtc
tttgctcttggaagggctcaggagcttctcttgattctagatgagtactggcagaaccac
ccagaactccatgatatcccaatatactacgcatcgtctttggccaagaagtgcatggcg
gtgtaccagacatacgtgaacgccatgaatgacaaaatccgcaaacagatcaacatcaac
aacccctttgttttcaaacacattagtaaccttaagagcatggatcattttgacgacatt
ggccccagcgttgtaatggcctccccaggcatgatgcaaagtggcttatccagggagctc
tttgaaagctggtgtactgataagaggaacggcgtcattatagccgggtactgtgtggaa
ggcacactcgccaagcatatcatgtctgaacctgaagaaatcactaccatgtctggacag
aagctaccactgaaaatgtctgtcgattacatttctttctctgctcacacggattaccag
caaaccagtgaatttattcgtgctctgaaaccacctcatgtgattttagtccatggagaa
cagaacgaaatggccagattgaaagcagccctgattcgagaatatgaagataatgatgaa
gttcacatagaggttcataatcctcggaatacagaagcagtgaccttgaacttcagggga
gaaaaactagccaaggtcatgggctttttagcagacaaaaaaccagaacaaggccagcgg
gtctcaggaatacttgtcaaaagaaactttaattatcacatactttctccttgtgacctc
tctaattatactgacttggccatgagcactgtaaaacagacccaagccattccatatacg
gggccttttaatttgctctattaccagctacagaaattgacaggtgatgtagaagaatta
gaaattcaggaaaaacctgctttgaaagtgttcaaaaatattactgtaatccaagaacca
ggaatggtggtattagaatggttggcaaacccttccaatgatatgtatgcagatacagta
acaactgtgatactagaagttcagtccaacccgaaaataaggaaaggtgcagtacagaag
gtttctaaaaaattagaaatgcacgtttatagcaagaggttggagatcatgctccaggac
atatttggagaagactgtgttagtgtaaaagatggttctattcttagtgtcacagtggat
ggaaaaactgctaatataaacttggagactcggactgtcgagtgtgaagaaggaagtgaa
gacgacgagtccctgcgagaaatggtggagctggccgcgcagagactgtatgaggccctg
acgccagttcactga
DBGET
integrated database retrieval system
