Vicugna pacos (alpaca): 102542321
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Entry
102542321 CDS
T08098
Symbol
COL4A4
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc04151
PI3K-Akt signaling pathway
vpc04382
Cornified envelope formation
vpc04510
Focal adhesion
vpc04512
ECM-receptor interaction
vpc04820
Cytoskeleton in muscle cells
vpc04926
Relaxin signaling pathway
vpc04933
AGE-RAGE signaling pathway in diabetic complications
vpc04974
Protein digestion and absorption
vpc05146
Amoebiasis
vpc05165
Human papillomavirus infection
vpc05200
Pathways in cancer
vpc05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102542321 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102542321 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102542321 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102542321 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
102542321 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
102542321 (COL4A4)
09158 Development and regeneration
04382 Cornified envelope formation
102542321 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102542321 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
102542321 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
102542321 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
102542321 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102542321 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpc04147
]
102542321 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
vpc00536
]
102542321 (COL4A4)
Exosome [BR:
vpc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102542321 (COL4A4)
Glycosaminoglycan binding proteins [BR:
vpc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102542321 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102542321
NCBI-ProteinID:
XP_006208028
UniProt:
A0A6I9IC50
LinkDB
All DBs
Position
5
AA seq
1650 aa
AA seq
DB search
MALVRCSFRWIKPLATDSWSLILILFSVQHAYGGGKKFIGPCGGRDCSLCQCFPEKGSRG
HPGPPGPQGPIGPLGPPGPIGIPGEKGMKGDSGLPGAAGDKGDKGPTGVPGFPGLDGIPG
HPGPPGPRGKPGIDGYNGSRGDPGFPGERGTFGPEGPPGLPGKKGEKGNPVFIFGTVKGI
QGDRGDPGPPGLPGPRGARGPAGAMGYPGEPGLAGPPGPPGSPGLKGNPGVGVKGQRGDP
GEVGQQGSPGPTLLVQPPDFCLYKGEKGIKGMPGMIGAPGPPGPKGEPGFGAKGEKGIPG
FPGPRGDPGSYGSPGFPGLKGEPGLFGDPGPFGFIGPKGEPGDRGRPGPPGVLATPSLPL
KGPPGDPGLPGRYGETGTVGPPGLPGPPGRPGEVCAGMMGPPGPQGFPGPPGFPGAAGIP
GRADSAPGKPGNQGPPGFPGAPGLPGPPGSEVVYCSVGHPGPQGIKGRMGPPGRRGSKGE
KGIAGLCACPPGPMGPPGLPGLPGRQGSKGDLGLPGWPGEKGYPGPPGARGSPGPPGRPG
APGPPGSKGEKGDMVVSRVKGRKGERGPDGPPGFPGQQGQHGQDGYAGEKGDPGPPGDHE
DAVPGDKGPPGPPGPPGKTGPRGPPGLGFPGPPGEKGPPGAPGFPGERGPDGQKGQKGDT
IPCNVTYPGRPGPPGFDGPPGPKGFPGRPGAPGLRCLDGPKGQRGKPGISGIPGPPGFRG
DVGEPGFEGEKGSSTVGPPGSPGSPGVNGQKGPPGDPAYGYPGPPGKRGLSGVPGSKGLR
GDPGRPGAAGPAGMPGFPGLKGPRGREGSAGFPGIPGLPAHSCGRGAPGRPGQPGLPGPP
GSPGAPGWKGQRGDMGPPGPAGMKGFPGVPGRPGVDGPRGPPGLPGPFGDDGLPGLPGPK
GPQGLPGFPGFPGERGTPGPDGHPGRKGELGQKGWPGFPGDPGVTGVKGERGLPGDEAEI
DIVSIKGKTGDPGPPGDSGFPGEQGAKGHPGMQGRRGEPGSHGPPGFHRGEPGRTGQPGL
PGLPGPPGPPGLRGIIGFPGFPGDQGEPGSPGPPGLPGVDGARGPKGYKGEPADQFGPPG
PKGEPGSPGFPGLLGPPGEQGLPGIQGPGGPPGRPGLPGPSGPAGYPGPSGSPGLNGLHG
LKGQKGTKGASGSHEMGPPGPPGILGPKGEPGDPGSPGISPPGLFGEKGPPGPPGRAGPP
GPAGAPGRAPKGDIPDPGLPGDQGPPGPDGPRGKPGPPGPPGSVDLLKGEPGDCGLPGPP
GLPGPPGPPGHKGFPGCDGKDGQKGPMGFPGPQGPHGIPGPPGEKGLPGPPGRRGPSGAP
GSRGEPGPPADEDACPRIPGLPGVPGPRGPEGAMGPPGMRGPPGPGCKGEPGPDGRRGED
GLPGFPGPPGQKGDMGEAGCPGAPGPPGAPGDPGPKGFGLGYLSGFLLVLHSQTDGEPTC
PAGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTLPFAYCNIHQVCHYARRNDKS
YWLASTAPLPLMPLSEEEIRPYISRCAVCEAPAQAVAVHSQDQSIPPCPRAWRSLWIGYS
FLMHTGAGDQGGGQALMSPGSCLEDFRAAPFLECQGRQGTCHFFANKYSFWLTTVKPDLQ
FSSAPSPDTLKEGQAQRQKISRCQVCVKQS
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggcattggtaaggtgttctttcaggtggattaagcccttggccacggattcctggtcg
cttattctcattctcttttctgtacaacacgcatatgggggtggaaagaagtttattggt
ccctgtgggggaagagactgctctctttgccagtgctttccggaaaagggatctcggggt
cacccaggaccacctgggccacagggtcctattgggcccctggggcctccaggacccatt
ggaattccaggagagaaagggatgaaaggtgacagtggccttcctggagcagcaggtgac
aaaggtgacaagggtccaacaggtgttcctggatttccaggtttggatggaatacctgga
cacccggggcctcctggacccagaggcaaacctggcatagatggctacaatggctcaaga
ggtgatccagggtttccaggagaaagaggaacttttggcccagaaggccccccaggactt
cctggaaaaaaaggagaaaaaggaaatcccgtgttcatttttggtactgtaaaaggtatt
cagggtgacagaggggacccaggacctcctggcttaccaggacccaggggtgcaagaggg
ccagcaggcgccatgggatatccaggagagccggggttagcgggacctccgggccctcct
gggagtccaggcttgaagggtaatcccggtgtgggagtaaaggggcaaaggggagacccg
ggtgaagttggccagcaaggttctccgggacccaccctcttggtgcagccacctgatttt
tgtctctataaaggagaaaagggcatcaaagggatgccaggaatgattggagctcctgga
ccaccgggacccaagggggaacctggttttggagcaaaaggagagaaaggtattcctggg
ttcccaggacctcggggtgaccctggttcctatggatctccaggttttccaggattaaag
ggagaaccaggactgtttggagatcccgggccatttggatttattggtccaaagggggaa
cctggagaccgtggacgcccaggaccaccaggtgttctggcaactccatctcttccactc
aaaggccccccaggggatcctgggctccctggccgctatggagaaacggggacggtggga
ccacctggtctccctggtcccccaggtagaccaggggaagtctgtgcaggcatgatggga
ccccctgggccacaagggtttcctggtcccccaggatttccaggggcagcagggattcct
gggagagctgattctgctccaggaaaaccagggaaccagggaccccctgggttccctgga
gcaccagggctgccaggacctccaggatcagaagttgtatattgtagtgttgggcatcct
ggaccacaaggaataaaaggcagaatgggtcctccaggaagaagaggctcaaaaggagaa
aaaggaattgcagggctctgtgcctgcccgcctggtcccatgggcccaccgggcctccct
ggacttcctggaaggcaaggtagtaagggagacttggggctccctgggtggcctggagaa
aaaggttacccaggcccacctggtgccagaggatccccagggcctccaggaagacctggt
gcaccaggaccacctggaagcaaaggagaaaaaggcgacatggttgtatcaagagtcaaa
gggcgcaaaggagaaagaggtcctgatgggcctcctggatttccaggccagcagggacaa
cacggtcaagatggatatgctggagaaaaaggggacccaggacccccgggggatcatgaa
gatgcagtcccgggtgataaaggacctcctggaccaccgggccccccggggaaaacagga
cccagggggcctccaggactgggattccctggcccaccaggggagaaagggccaccagga
gctccaggcttcccgggcgagaggggtcctgatggccagaagggtcagaaaggtgataca
attccttgcaatgtaacctaccctgggaggccaggccctccaggttttgatggacctcca
ggtccaaagggatttccaggtcgtccgggcgctcccgggctgaggtgtttggatgggcca
aagggtcagcgtggcaaaccaggaatctcaggaatacctggtccacctggttttcgtggt
gatgtgggagagccaggttttgaaggagaaaaggggtcctccactgttgggcccccaggc
tctccaggttcacctggagtgaacggtcagaaaggacccccgggagaccctgcttatggc
tacccaggacccccaggaaagaggggtctttcgggagttccagggtcaaagggactcaga
ggtgatcctggacgcccaggggctgcagggccagctggcatgcccgggttcccgggtctc
aaaggtcccagaggcagagagggaagtgcggggtttccaggcatcccaggcctacccgct
cactcctgtggaagaggcgctccaggaagacctgggcaaccggggctccccgggcctccg
ggcagcccaggtgccccaggttggaaaggacaacgaggagacatgggacctcctggacct
gctggaatgaagggctttcccggagtcccaggacggccaggggtagatggaccccgagga
cctccgggactcccaggtccctttggggatgatgggctgcctggccttccgggcccaaag
ggaccccaggggctgcctggcttcccgggttttcccggagagagaggaacgcctggccca
gatggacaccccggcagaaagggagaactcggacagaagggctggcctggcttcccagga
gacccaggagtgacaggtgtcaaaggagaaagaggactcccaggagatgaagcagaaata
gatattgtttccataaaagggaaaactggggatcctgggcctcctggagatagtggattc
ccaggagaacaaggtgctaaaggccatcctgggatgcaagggaggagaggagagccagga
agccatggaccacctggatttcacagaggggagcccgggagaactgggcagccaggcctt
cctggactcccaggccctccaggcccacctgggctgagagggatcattggttttcctgga
tttccaggtgaccagggtgagccaggttctccagggccccctggacttccaggagttgat
ggagcaagaggacctaaaggatacaaaggtgaacctgcagatcagtttggcccacctggt
ccaaagggcgagccaggtagccctggatttccaggacttctgggaccacctggagagcag
ggcttgcctggtattcaaggacctggaggaccaccgggaaggccaggactacctggcccc
tctggacctgcagggtatccaggtccttccgggtcgccgggcctgaacggcttgcatggc
ttaaagggtcaaaaaggaaccaaaggtgcttcaggttcacatgaaatgggcccaccaggt
ccaccgggaatacttgggccaaaaggggagccaggagaccccgggagcccaggaatttct
cctccaggactttttggagaaaaaggtcccccaggccccccagggagagctggaccgcct
ggtcccgcaggtgccccaggaagagctcctaagggtgacattccggacccaggtctgcct
ggagatcagggacctcctggccccgatggtccaagaggaaaacctggacctccagggccc
cctgggagcgttgaccttctgaaaggggaaccaggtgactgtggcctgccggggcctcca
ggtcttcccggcccgccaggccctccaggacacaaaggcttcccaggatgtgatggtaaa
gacggccagaaaggaccaatgggattcccagggccgcaggggccacatggaattcctggg
ccccctggagagaagggtttacctggacctccaggcagacgagggccctcgggtgctcca
ggttccagaggtgaacctgggccacctgcagacgaggatgcctgcccccgaatcccgggc
cttcctggggtaccaggcccaagaggaccagaaggagccatggggcccccgggaatgaga
ggccccccaggaccagggtgcaaaggggagcctgggccggatggcaggaggggcgaggac
ggcctcccagggttccctgggcctccgggacagaaaggggacatgggagaagcgggctgc
ccaggagcaccaggccctcctggggccccgggggatcctgggcccaaagggtttggcctc
gggtacctcagcggcttcctcctggttctccacagtcagacggatggagaacccacctgc
cccgcgggcatgcccaggctctggacggggtatagtctgttatacctggaaggacaggag
aaggctcacaatcaagaccttggcctggcgggctcgtgccttcccgtgttcagcacactg
cccttcgcctactgcaacatccaccaggtgtgccactacgcccggaggaacgacaagtcc
tactggctggccagcacggcgccgctgcccctgatgccgctctcggaggaggagatccgg
ccgtacatcagccgctgcgccgtgtgcgaggcccccgcgcaggccgtggcggtgcacagc
caggaccagagcatcccgccgtgtccgcgggcctggaggagcctctggatcgggtactct
ttcctgatgcacacaggagctggggaccaaggaggcgggcaggccctcatgtcacccggc
agctgcctggaggatttcagagccgcgccgttccttgaatgccaaggccggcagggaact
tgccacttttttgcaaataagtacagcttctggctgacgacggtgaaacctgatttgcag
ttttcctcggcaccatcaccagacaccttgaaagaaggccaggcccagcgccagaaaatc
agcaggtgccaagtctgtgtgaagcagagctag
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integrated database retrieval system
