Vicugna pacos (alpaca): 102542544
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Entry
102542544 CDS
T08098
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
102542544 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vpc04121
]
102542544 (SLX4)
03400 DNA repair and recombination proteins [BR:
vpc03400
]
102542544 (SLX4)
Ubiquitin system [BR:
vpc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
102542544 (SLX4)
DNA repair and recombination proteins [BR:
vpc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
102542544 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
YlbE
Motif
Other DBs
NCBI-GeneID:
102542544
NCBI-ProteinID:
XP_015094796
UniProt:
A0A6J0AL05
LinkDB
All DBs
Position
18
AA seq
1781 aa
AA seq
DB search
MDESDDDFKELCASFFQRVKKNGSKEVSGERKTQKASNSTQIRSKLKRTKPAASKSKTLQ
GPAERKTRSGSQAPRPQKQRAPKWPESEPAPPENAEGGVHASAVLQDSTWSTQTEAAPDS
NSQPLPSCLTVTVPSPSKPRAAELVLQRMQQFKRADPERLKHASEGCSLEAALEENVPKG
PQEEMMAGNGSRLGLPAMESNAEVALALQREFEQERASTCDDSLEEKGLFFCQLCQKNLS
AMNVTRREQHVNRCLDEAEKALRPSAPQIPDCPICGKPFLTPKSRISHLKQCAVKMEVGP
QLLLQAVRLQTAQPEGASSTPAPSLSNHIGGLKRKGATTKKEPRKRRKVAEPEVSSEDLQ
VAMALSRSEMEQEVVPAALRLGNAFSERMRLGAEKKSRKKKAPASPPQLLVQDRETTGRQ
IEDRVAQLFAEEVELSCTPPLPASRILKEALKKGSWCLRPPGGKQNFLWEGSALTRAWAL
ESFYTVSLVPPMAPQLPPKEPTRPPVLPERPELVQTPPAVHSACLADRSPGNPLPSASQR
EHQALQDLVDLAREGLSASPWPCTQGSAGSGGAPGMDLLPGGLPLTGFVLPAKKCPETDR
QASLSLSLLVADFSAMVNNPHLSDIQFQMDSGEVLYAHKFVLYARCPLLMQYVNSEGFFS
VEDGDVRAQRVLLSDISAAAARAFLCYLYTADTVLPPQLVPDLSFLAHRFGVSELVHLCE
QVPAAMDSEGGLREEQEGEDCESRAETFQELLRAVWLEEEEEAEALVRSEDREEDRERVN
EAEMEEIYEFAATQRKLLQGEKAPEVEGEADQLGEDGPVSGGIFTSVEDKEQSGDEEQME
SSGRGRDEAPAKWKDIRPSVPLPAGGQGWDGAERAESPKEGLDGPRSPGPARGLTEKEEG
TSLCSEQPFSSLLAGHPVLSQVTSDRKEGNGTIWEPGVGSSPPPPLQQAPPSPSHSFPSQ
SPPGRSPRRPRACPHHTTDLSPPTPQSQGTASRVASQNAPAKPKRARSLPTSHKEPSQKG
KECGSVLACRGKGVLISPEKSPSMDITQSKPGCLSSRSQNSPSGMNREDEIILLLDSDEE
LELEQTRTKSVFNGPPEERKVLEVSTKSSELFSIIDVDAEQDPSQSPPGREAMLQREAEG
PSGNRGSVGGRGTSQLFCDPESSRGEDSTTDTSWLVPATPLASRSRNCSSQTQITGLGSR
PSADQVAPPKPRAPLENRDAPEATNKFSVIVPQMSSSRLGLVTPGSSDSGRQVCRSPSSP
RPRHHQHFSPPAPCPVSGVLTDLTGQLQKRPPPGPSLAAQATASEVVEVEDSEDEQDGAP
QQASSSPLLDGDPPIPVNDWCWHMEPLSPIPIDHLNLERTGPLSTSSPGSRAGGAPDSGD
CHSPALLGTTPIRGSCTGLRKSQEKSPGAGSPGSSRLSFLNSALWEDWDGEEQKSPEALP
LAQMPGADGAQRAGEFQTPSANRKKNLPPKVPITPMPRYSIMETPVLKKELDRFGVRPLP
KRQMVLKLKEIFQYTHQTLESDSEDESWSSHVPLEAPCSQSHTTKTCKASRAAGHTQVEA
TSRPIPQRSKGPAKTKGPQHLKQQPGGSNLVLSVSPAKEVPPGPDGDTQLPASQESTATS
ADSSDSSCSSQSSSCEFGAALESAGEDEAGEEGVSASQAAVQAAATEEAVRHYIRSQPAL
YRKVLLYQPFELAELQAELKQQGIRVAMGKLLDFLDAHCITFTTAAARREKMERKRRRRV
GKKKQGRTSRPVPPSPPPATSSLRVCSPLLEPAPRGVSTPL
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtcagacgatgactttaaggaactctgtgccagctttttccaaagggttaaa
aagaatggctccaaggaagtgtctggggaaaggaagacacaaaaggcctccaacagcacc
cagataagaagcaaactgaaaaggaccaaaccagctgcttccaagagcaaaaccctgcaa
ggccctgctgagaggaaaactcgatctggcagccaggccccacggcctcaaaagcagagg
gcacccaagtggccagagagtgaaccagctcccccggagaatgcagagggaggtgtgcat
gcttctgctgtgctccaagacagcacgtggagcacccagacagaggctgctcctgacagc
aactcccagccgcttccttcctgtctgactgtgacggtgccaagtccctccaaaccccgg
gcagcagagctggtcctacagcggatgcagcagttcaagagagcagaccccgagcgtttg
aaacatgcttccgaaggatgctccctcgaggctgcgcttgaagaaaacgtcccaaagggc
cctcaagaggagatgatggcggggaacgggtctcggctgggactcccggccatggagagc
aacgctgaggtggccttggccctccagcgggagtttgagcaggaacgggcatccacatgt
gacgacagcctggaggagaagggcttgttcttctgccagctctgtcaaaagaacctctca
gctatgaacgtgacgcgaagggagcagcacgtgaaccggtgcttggatgaggctgaaaag
gcactgagaccttctgcacctcaaatccctgactgcccaatttgtggcaagccatttctc
accccaaagagcagaatcagtcacttgaaacagtgtgcggtgaagatggaggttggccca
cagctcctgctccaggccgtgcggctgcagacagctcagcctgagggggccagcagcaca
ccggcgcccagcctcagcaatcatattggaggtctaaagcggaagggagccaccaccaag
aaggagccacggaagaggcggaaggtcgccgagcctgaggtgtcatctgaggacctgcag
gtggccatggctctgtcccggtccgagatggagcaggaggttgtgccggcagcgctcaga
ctgggaaatgctttttctgagaggatgagactgggagcagagaagaagagtcgcaagaag
aaagcacctgcttccccaccccagctgttagtccaggaccgggagaccacagggagacag
atagaggatcgtgtggcccagctctttgcagaggaggtggagctgtcctgcacgccgccc
cttcctgccagcagaattttaaaggaggcgctaaagaagggcagctggtgtctgcgaccg
cctggagggaagcagaactttctgtgggagggcagcgccctgactagggcctgggccctg
gaatccttctacacggtcagcctggtcccccccatggcaccccagctgccccctaaggag
cccacacgaccaccggtgctccctgagaggccagagctggtgcaaacgccacctgctgtc
cacagtgcctgccttgcggaccgcagccctgggaatccattgccctctgccagccagagg
gagcatcaggccctgcaggacctcgtggacctggcaagagaggggctgagcgccagccca
tggccctgcacccagggctcagctggctctggaggggccccaggaatggacttgctgcct
ggtggccttccactgactgggtttgtcctgccagccaagaagtgcccggagacggatcgc
caggcttcgctctctcttagtttgctggttgctgatttcagtgccatggtcaataacccc
cacctgagtgacatccagtttcagatggacagcggagaggtgctttatgcccacaagttc
gtgctttatgcccgatgcccacttctcatgcagtatgtgaacagtgagggcttcttctct
gtggaagatggtgatgtgagggcccagcgtgtcctgctgagtgacatcagcgctgcggcc
gcccgcgcgttcctgtgttatctctacactgccgacactgtcctgcctccgcagctggtc
cctgacctgagctttctggcccacaggtttggtgtgagtgagctcgttcacctgtgcgaa
caggtgcctgcagcgatggattcggagggcgggctgcgggaggagcaggaaggcgaggac
tgtgaaagcagagcggagaccttccaggagctcctgcgggcagtgtggctggaggaggag
gaggaagcagaggctctggtgagatccgaggaccgtgaagaagacagagaaagagtgaat
gaggcagagatggaagaaatttatgagtttgcagctactcagcgaaagcttctccagggg
gagaaggctccagaggtcgagggagaagctgaccagctaggggaggatggcccagtttct
gggggaatcttcacaagcgttgaggataaagaacagtcaggagacgaagaacagatggaa
tcatctggaagagggagagatgaggccccagccaaatggaaagacatcagaccgtccgtt
cccctgcccgctgggggccagggctgggacggggcagagcgggcagagtcgccgaaggaa
gggctggacggtccccgctctcccggccctgcgcggggcctgacagagaaggaggagggc
acctctttgtgctctgaacagcccttctcgtcacttctcgccggacaccctgtactgtcc
caggtgacaagtgatcgcaaggaaggaaacggcaccatctgggaaccaggagtggggagt
tcccctccccctcctcttcagcaggcacccccctcaccctcacactccttcccatcacag
tcccctccgggcaggagtccccgccggccacgcgcttgccctcatcacaccactgacctg
tccccgccaaccccccagtcacagggcaccgcttccagggtggcctcccagaacgcacca
gcaaagccaaagagggcaaggagccttcccacatcacataaggagcccagccagaaaggc
aaggagtgtggttctgtgttggcatgcagaggtaaaggggtcctgatctccccagaaaaa
tctccatccatggacataacccagtcaaaacctggctgtttgagttccaggtctcagaac
tctccatctggcatgaacagagaagatgagattatccttttattggattcagatgaagag
ctggagctagagcaaaccagaacaaagtcagtttttaatggtcccccagaagaaaggaaa
gttctagaagtgagcaccaagtcctctgagctgttttccatcatcgacgttgatgcggag
caggacccttcccaaagcccaccaggaagggaggccatgctgcagcgggaggcggagggg
ccgtcagggaaccggggctctgttgggggcagagggacctcccagctgttctgtgaccct
gagagcagccgcggcgaggacagcaccacagacacatcatggctggtgcctgccaccccg
ctggccagcagaagccgcaactgttcatcgcagacccagatcacgggcctcgggtccagg
ccctcagcagatcaagtggccccacctaagcccagggccccgttagagaacagggatgcg
ccagaagccacgaataagttttcagtcattgtgccccagatgtcatcgtcacgcctgggc
ctcgtcactcctggcagctctgacagtgggaggcaggtctgcagaagcccgtccagtccc
cgtcccagacaccaccagcacttctctcctccagctccctgtcctgtctcaggagtcctc
accgatctcaccgggcagctccagaagcgcccaccacctggcccaagcctggcagctcag
gccacagccagtgaagtggtggaggtggaggacagtgaagacgagcaggacggggccccc
cagcaggcaagcagcagccccctgctggacggtgaccccccgattccagtcaacgactgg
tgttggcacatggagcccctctcaccaattccgattgaccacttgaaccttgagcggacg
ggccccctgagcaccagcagccccggcagtagggcagggggcgccccggacagtggtgac
tgccactccccagcactgctgggcaccacccccatccgaggaagttgtactggcctaaga
aagtctcaagagaaatcccctggggccggctcccctggaagcagcaggctgagctttctg
aattcagctctgtgggaagactgggatggagaggaacagaagtccccagaggctcttcct
ctggcccagatgccgggtgctgatggagctcagagagcaggagagtttcagacaccgagt
gctaatcggaagaagaacttgccccccaaagtgcccataacccctatgccaaggtattcc
atcatggagaccccagtgctgaagaaagaactggataggtttggggtccgccctctgccc
aaacgccagatggtcctgaaactgaaggagatattccagtacactcatcagacgctggag
tcagactccgaggatgagagctggtcctcacacgtgcccttggaggctccttgtagccag
tctcacaccaccaagacctgcaaggcttcaagggcagctggccacacccaggtggaggcc
acttctcgccctattccccaaaggtccaaggggcctgccaagaccaagggcccccagcat
ctaaagcagcagcctggtggaagcaacctggtcctgagcgtgtcaccagccaaggaggtg
cctccaggccctgatggtgacacccagctcccggcctcccaggaatccacggccacctct
gcggacagcagtgacagctcctgtagctcacaaagttcttcctgtgagtttggagcggcc
ttggagtctgcgggagaagacgaggcaggcgaggagggggttagcgcttcgcaggcggcc
gtccaggcagcggccacagaggaggccgtgaggcattacatacgctcccagccggccctc
taccgcaaggtcctcctgtaccagcccttcgagctggcagagctgcaggccgagctgaag
cagcaaggcatccgcgtggccatggggaagctgctggacttcctggatgcccattgcatc
accttcaccacagctgccgcccgcagggagaagatggagaggaagagacggcggcgtgtg
ggcaagaagaagcagggcaggaccagcaggcctgtgcccccctccccacccccggccacc
agcagcctgagggtctgcagcccccttcttgagcccgccccccgtggggtttccactccc
ctgtga
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integrated database retrieval system
