Vicugna pacos (alpaca): 102542586
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Entry
102542586 CDS
T08098
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X4
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102542586 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102542586 (CNOT1)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102542586 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102542586 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
102542586
NCBI-ProteinID:
XP_006214553
UniProt:
A0A6I9IN27
LinkDB
All DBs
Position
9
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgattcaggagtgtgcgtct
ctgattacgaagccaaattttatctcgacgctgtcctatgccattgataatccattacac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagctcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttat
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctctttgggcagaagggagcttttggagttggacag
gaacagatagacgcttttcttaagacgctacgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccacttttataccctgaaaaacgggacatactaatggacagaatcctg
cctgattccggaggggtagctaaaaccatgatggagagctccttggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgccgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttgggaatgatggctcgaact
cattcaggattaacagacggaattccattacagagtatctctgctcctggcagtggtatc
tggagtgatggaaaagataaaagtgatggagcacaggcgcacacatggaatgtagaagtc
ttgattgatgttctcaaagaactgaacccaagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtggtctatggt
attcagaggggtctgggtatggaagtgtttcctgtagacctcatatacagaccttggaaa
catgcagaaggccagctctccttcattcagcattcccttataaatccagagatcttctgt
tttgccgattatccctgtcatacagttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgaggctc
gcagaggtggggcagtatgagcaagtcaaacagctcttcagcttccctatcaaacactgt
ccagacatgctggtattggccttactacaaatcaacacctcctggcacaccttgcgccac
gaactcatctccactctgatgccaattttccttggaaaccaccctaactcggctataatt
ttgcactatgcatggcatgggcagggacagtctccttcaatccgccaacttatcatgcat
gcaatggctgaatggtacatgcgaggggaacagtatgatcaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaatacgagagcatggagagccttttatccaggcatgtatgactttttta
aagaggcggtgtccttctattttgggtggacttgctccagagaaagatcagcccaaaagt
gctcaacttcctccagaaactttggcgaccatgttggcctgtttacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatcctcaccatggtagccaactgcagtaatgtt
atgaacaaggccagacagccaccacctggagttatgccaaaaggacgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgatcctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggctttcctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacccctatcaacccca
aatcagacaactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
aacgatccttttgtacagaggaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagagaatatataatcacccacca
catccaaccatgtccgttgatgaggtattagaaatgctacagaggtttaaagattctacc
ataaagagggaacgagaagtgtttaactgtatgctaaggaacttgtttgaagagtatcgg
ttctttcctcagtaccctgataaagagttacatataacagcctgcctatttggtgggata
attgaaaaaggactggtcacttacatggcactaggtctggccctacgatatgttcttgaa
gccttacgcaagccttttggatccaaaatgtattattttgggattgctgcattagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctatcagtcac
tttatgcaatttccacatcatttacaagaatatatcgagtatggacagcagtctcgagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcgctggctcaggcc
caggcccaggcccaggttccagcaaaagctccccttgctggtcaggttagcactatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaggccaaccggagtc
agctttaagaaagatgtgccaccttctattaatactacaaatatagatacgttgcttgtg
gccacagatcaaacggagagaattgtagagcccccagaaaatatccaagagaaaattgct
tttatcttcaacaatctgtcacagtcaaatatgacacaaaaggttgaagaactgaaggaa
actgtgaaggaagaatttatgccttgggtttcacaatacctggttatgaagagagtcagt
attgagccaaactttcacagcctatattcaaactttcttgacacgctgaagaatcctgaa
tttaataagatggttctgaatgagacctatagaaacatcaaagtgctcctgacctctgat
aaagctgcagccaatttctccgatcgttctttgctgaagaacttgggacattggctagga
atgatcacactagctaaaaataaacccatcttgcacactgacttggatgtaaaatctttg
ctgctagaggcttatgttaaaggacagcaagagttgctctatgtagtgccctttgttgcc
aaagtcttagagtctagcattcgcagcgtggtttttaggccacccaacccttggacaatg
gcaattatgaatgtattagctgagctacatcaggaacatgacttaaagttaaacttgaag
tttgagatcgaggtcctctgcaagaaccttgcattagacatcaatgagctaaaacctgga
aacctcctaaaagataaagatcgcctaaagaacttagatgagcaactctctgctccaaag
aaagatgtcaagcaaccagaagagctccctcccatcacaactacaacaacttctacaaca
ccagctaccagtaccacctgtacagccacagttccaccacagccacagtatagttaccac
gacatcaatgtctattccctcgcgggcctggcaccacacattactctaaacccaacaatt
cccttgtttcaggcccatccacagttgaagcagtgtgtgcggcaagcaattgaacgggct
gtccaggagctggtccatcctgtggtggatcgatcaattaaaattgccatgactacttgt
gagcaaatagtcaggaaggattttgccctggattctgaggaatctcgaatgcgaatagca
gctcatcacatgatgcgtaacttgacagctggaatggctatgattacttgcagggaacct
ttgctcatgagcatatctaccaacctgaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagggaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcggtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaaggtcgcaggtac
tgtgatcctgttgtgttaacataccaagctgagcggatgccagagcaaatcaggctgaaa
gttggtggtgttgacccaaaacagctggctgtttatgaggagtttgcacgcaatgtgcct
ggcttcttgcctacgaatgatttaagtcagcccacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgcattacagagctggag
cagcatcttcatgccatcccaccgactttggccatgaaccctcaagctcaggctcttcgg
agtcttttggaggttgtagtattatctcgaaactctcgggatgccatagctgctcttgga
ttgctccagaaggctgtagaaggcttactagatgccaccagtggtgctgatgccgacctt
ctgcttcgctatagggagtgccacctcttggtcttaaaagctcttcaagatggccgagca
tatgggtctccgtggtgtaacaaacagatcacaaggtgcctaattgaatgtcgggatgaa
tataaatataatgtggaggcagtggagttactaattcgcaatcatttggtcaatatgcaa
cagtatgatcttcacctggctcagtcaatggagaatggtttgaactacatggctgtggca
tttgctatgcaattggtaaaaatcctgctggtggatgaaaggagtgttgcccatgttact
gaggcagatctcttccacaccattgaaaccctcatgaggattaatgctcactccagaggc
aatgctcctgaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggcggcccaaactttatgatgcattctgggatctctcaagcctca
gagtatgatgatcctccaggcctgagggagaaggcagaatatctactgagggaatgggtg
aatctctaccattcagcagcagctggtcgtgacagtaccaaagctttctctgcgtttgtt
ggacagatgcatcagcaaggaatcctgaagacggatgacctcataacaaggttctttcgt
ctctgtactgaaatgtgtgttgagatcagttaccgtgctcaggcagagcagcagcacaat
cctgctgctaatcccaccatgatccgagccaagtgctatcacaacctggatgcctttgtc
cgactcattgcactgctagtgaagcactcaggggaggccaccaacactgtcacaaagatt
aatctgctgaataaggtccttggtatagtagtgggagttctcctacaggatcatgatgtt
cggcaaagtgaatttcagcagcttccctaccatcgaatttttatcatgctgctcttggaa
ctcaatgcacctgagcatgtattggaaaccattaatttccagacacttacagctttctgc
aacacattccacatcttgagacctaccaaagctcctggctttgtgtatgcttggcttgaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacgccacagcagaaggga
tggcctatgtacgcacagctactgattgatttattcaaatatttagcgcctttccttaga
aatgtggaactcaccaaacctatgcaaatcctctacaagggcactttgagagtgctgctg
gttcttttgcatgatttccctgagttcctttgtgattatcattatggattctgtgatgtg
atcccaccgaattgtatccagctaagaaatctgatcctgagtgccttcccaagaaacatg
aggctcccagacccattcactcctaatctgaaggtggatatgttgagtgaaattaatatc
gcaccccggattctaaccaattttactggagtgatgccacctcagttcaaaaaggatttg
gattcctatcttaaaactcgatcacctgtcacttttctgtctgatttgcgcagcaaccta
caggtatccaatgagcctggcaatcgctacaacctccagctcattaatgcactggtgctc
tatgtagggactcaggccattgcacacatccacaacaagggcagcacaccttctatgagc
acgatcacccactcggctcacatggacatcttccagaacctggctgtggacttggacact
gaaggtcggtatctcttcttgaatgcaattgcaaatcagctgcggtacccaaatagccac
actcactacttcagctgcaccatgctgtacctgtttgcagaggccaacactgaagctatc
caagaacagatcacaagggtccttttggaacggttgattgtaaataggccacatccttgg
ggtcttcttattaccttcattgagttgattaaaaatccagcatttaagttctggaaccat
gagtttgtacactgtgccccagaaattgaaaagttattccagtcggttgcacagtgctgc
atgggacagaagcaggctcagcaagtaatggaagggacaggtgccagttag
DBGET
integrated database retrieval system
