Vicugna pacos (alpaca): 102543307 Help Entry 102543307         CDS       T08098                                  Symbol XAB2 Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism vpc  Vicugna pacos (alpaca) Pathway vpc03040   Spliceosome Brite KEGG Orthology (KO) [BR:vpc00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     102543307 (XAB2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:vpc03019]     102543307 (XAB2)    03041 Spliceosome [BR:vpc03041]     102543307 (XAB2) Messenger RNA biogenesis [BR:vpc03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      102543307 (XAB2) Spliceosome [BR:vpc03041]  Complex B   Other components    Prp19-related factors     102543307 (XAB2)  Complex C     102543307 (XAB2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 TPR_12 TPR_2 TPR_8 Suf TPR_19 TPR_15 ARM_TT21 ARM_TT21_C TPR_NPHP3 TPR_1 Motif Other DBs NCBI-GeneID:  102543307 NCBI-ProteinID:  XP_006206398 UniProt:  A0A6I9IBR7 LinkDB All DBs Position 22 AA seq 855 aa AA seqDB search MVVMARQSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISRNPDKVQSLSV DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE QQSVPAAVFGSLKED NT seq 2568 nt NT seq  +upstreamnt  +downstreamnt atggtggtgatggcgcgacagtcaaggcccgagcggccggaccttgtcttcgaggaagag gatcttccctatgaggaggaaatcatgaggaaccagttctccgtcaaatgctggctccgc tacatcgagttcaaacagggtgccccgaagcccaggctcaaccagctgtatgaacgggcg ctaaagctgctgccctgcagctataaactctggtaccgatacctgaaggcacgccgggca caggtgaagcatcgctgtgtgactgaccccgcctatgaagatgtcaacaactgccacgag agggcatttgtattcatgcacaagatgccacggctgtggctagattattgccaattcctg atggaccagggacgcgtcacgcacacccgccgcacttttgaccgtgcgctccgggcattg cccatcacacagcactctcgtatttggcccctttacctgcgcttcctgcgctcacaccct ctgccggagactgctgtgcggggctaccgacgcttcctcaagctgagccccgagagcgct gaggagtacattgaatacctcaagtcgagtgaccggctggacgaggcagcacagcgcctg gccaccgtggtcaatgatgagcgcttcgtgtccaaggccggcaagtccaactaccagctg tggcacgagctctgcgacctcatctcccggaacccagacaaggtgcagtcactcagcgtg gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc tcgctggccgactactatatccgcagcggtcactttgagaaggctcgggatgtgtatgag gaagccatccggacggtcatgaccgtgcgggacttcacccaggtgtttgacagctatgcc cagtttgaggagagcatgatcgcagcgaagatggagactgcctcggagctggggcgggag gaggaggatgacgtggacctggagctgcgcctggcccgcttcgagcagctcatcagccgg cggcccctgctcctcaacagcgtcctgctgcgtcagaacccacatcacgtgcacgagtgg cacaagcgcgtggccttgcaccagggccgcccccgggagatcatcaacacgtacacggag gccgtgcagacggtggaccccttcaaggccacaggcaagccccacacgctgtgggtcgcg tttgccaagttttatgaggacaacgggcagctggacgacgcccgcatcatcctggagaaa gccaccaaggtgagcttcaagcaggtggacgacctagccagcgtgtggtgcgagtgtggc gaactggagctccggcacgagaactacgaccaggccctgcggctgctgcggaaggcaacg gcgctgcctgcccgccgcgccgagtacttcgacggctcagagcccgtgcagaaccgcgtg tacaagtctctgaaagtgtggtcgatgctggccgacctggaggagagcctcggcaccttc cagtccaccaaggccgtgtacgaccgcatcctggacctgcgcatcgccacgccccagatc gtcatcaactacgccatgttcctggaggaacacaagtactttgaggagagcttcaaggcg tacgagcgtggcatttcactgttcaagtggcctaatgtgtctgacatctggagcacctac ctgaccaaattcattgcccgctatgggggccgaaagctggagcgggcacgggacctcttt gaacaggcactggacggctgccctcccaaatacgcaaagacactgtacctgctgtacgcg cagctggaggaggagtggggcctggcccggcatgccatggccgtgtacgagcgtgccacc agggccgtggagcccgcccagcagtacgacatgttcaacatctacatcaagcgggcggcc gagatctacggagtcacccacacccgcagcatctatcagaaggccattgaggtgctgtcg gatgagcatgcccgggagatgtgcctgcggtttgccgacatggagtgcaagcttggggag atcgaccgtgcccgggccatctacagcttctgctcgcagatctgcgacccccggacgaca ggggcgttctggcagacgtggaaggacttcgaggtccggcacggcaacgaggacaccatc agggagatgctgcgcatccgccgcagcgtgcaggccacatacaacacgcaggtcaacttc atggcctcccagatgctcaaggtgtcgggcagcgctacgggcaccgtgtctgacctcgcc cccgggcagagtggcatggatgacatgaaactgctggagcagcgggccgaacagctggca gccgaggctgagcgtgaccagccctcgcgggcccagagcaagatcctgtttgtgaggagc gacgcctcccgggaggagctggccgagctggcgcagcaggccaacccagaggagatcgag ctgggtgaggacgaggacgaggacgagatggacctggagcccaacgaggtgcggctggag cagcagagtgtaccagctgccgtgttcgggagcctgaaggaagactga

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