Vicugna pacos (alpaca): 102543314
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Entry
102543314 CDS
T08098
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102543314 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102543314 (CPSF2)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102543314 (CPSF2)
U7-dependent histone pre-mRNA processing factors
102543314 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
102543314
NCBI-ProteinID:
XP_006208274
UniProt:
A0A6I9ICH9
LinkDB
All DBs
Position
6
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattatcaaattaactaccctttctggggtccaagaagagtctgctctttgc
tatcttctccaagtcgatgaatttagatttttattggactgtggctgggatgagcacttt
tctatggatattatagattctctgagaaagcatgttcaccagatcgatgcagtgctgttg
tctcaccccgatcccctccacctgggggccctcccatatgctgtcggaaagttgggtctg
aactgtgctatctatgcaaccattcctgtttataaaatgggacagatgttcatgtatgac
ctttatcagtcccgacacaatacagaagactttacactctttacactagatgatgtggat
gcagcctttgataaaatacagcagttaaaattctctcagattgtgaatttgaaaggtaaa
ggacatggcttgtctatcacacctctgccggctggtcatatgataggtggaacaatatgg
aaaatagtcaaagatggagaagaagaaattgtttatgcagttgacttcaaccacaagagg
gagatccacttaaatggatgttccctggaaatgctaagcagaccttccctacttatcaca
gattcgtttaatgctacgtatgtgcagcccaggagaaaacaaagagacgagcaacttctg
acaaatgtcctggaaacacttcgaggtgatggaaatgtattaatagcagtggacactgca
ggcagggttttagaacttgctcagctccttgatcaaatctggagaactaaagacgcagga
ctgggtgtttactcattggcactcctcaataacgtcagttataatgtggtggagttttct
aagtcccaggtggagtggatgagtgataaattgatgagatgttttgaagacaaaagaaat
aatccatttcagtttcgccatctatctctatgtcatggtctttctgacttggctcgagta
cctagccctaaagtggtacttgccagccaacctgacctggaatgtggattttcacgggat
ctctttattcagtggtgtcaggaccctaaaaactcaatcattctgacttacagaactact
cctgggactttagcacgtttcctaattgataatccttctgaaaaaattacagaaatagag
ttgaggaaacgtgtgaagcttgaaggaaaagaacttgaagaatacttggaaaaagagaaa
ctaaaaaaagaagctgctaaaaaacttgagcagtcaaaagaggcagacatagattccagt
gatgaaagtgacgttgaggaagacattgaccagccatccgctcataagactaagcatgac
ctgatgatgaaaggtgaaggcagtcgtaaaggaagtttcttcaaacaggctaaaaagtct
tatcctatgtttcctgccccagaagaaagaattaaatgggatgaatatggcgaaattatc
aaaccagaggatttcttagtgccagaacttcaggctactgaagaagaaaaaagcaaatta
gagtctggcctgacaaatggagatgaacctatggatcaggatttatctgacgttcctact
aagtgtatttctacaacagaatctattgaaataaaagccagggttacttacatagactat
gaagggcgctctgatggggattccattaaaaaaatcatcaatcagatgaaaccacgacag
ttgatcattgtccatgggccaccagaggccagtcaagatctcgcagagtgctgccgtgcg
tttggtgggaaagatattaaggtgtacatgccaaagctacacgaaacggtcgatgccact
agtgaaactcacatctaccaggtgagattaaaagattctcttgtcagctcccttcagttt
tgcaaggcaaaagatgcggaattagcttggatagacggtgtcttagacatgagggtttcc
aaagtggacacaggagttattttagaagaaggagaactcaaggatgatggagaagactca
gaaatgcaagtggacgctccttcagattctagcgttatagcgcagcagaaggccatgaaa
agcctgtttggagacgatgagaaagaaaccggcgaagaaagtgagatcattcctacattg
gaacccttacctccccatgaggttcctggacatcagtcagtttttatgaacgaaccaaga
ctatccgacttcaaacaagttcttttacgagaggggattcaagctgaatttgtaggaggt
gtactcgtttgcaacaatcaagtagcagttcgtagaacggaaactggacgcattggatta
gaaggctgcctttgtcaagatttttataggataagagaccttttatatgaacagtatgcc
attgtgtaa
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