Vicugna pacos (alpaca): 102543650
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Entry
102543650 CDS
T08098
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102543650 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102543650 (EXOSC1)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
102543650 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
102543650 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
102543650
NCBI-ProteinID:
XP_006210625
UniProt:
A0A6I9IHH9
LinkDB
All DBs
Position
11
AA seq
195 aa
AA seq
DB search
MAPPVRYCVPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCMTKSSENGALPVISVMRETE
SQLLPDVGSIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK
SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
EFRKVARVQPEFLQT
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcccgtgaggtactgcgtccccggcgaacgtctatgtaacttggaggagggc
agcccaggcagcggcacttacacccggcacggctacatcttttcgtcgcttgctggctgc
atgacgaagagcagcgagaacggcgcgcttcctgtcatatctgtgatgagagaaacagag
tcccagttactgccagatgtgggatctattgtaacctgtaaggtctctagcattaattca
cgctttgccaaagtacacatcctttatgtggggtccacaccacttaagaactcttttcga
ggaactatccgcaaggaagatgtccgagctactgaaaaagacaaggttgaaatttataag
agttttcgcccaggagacatcgtcttggccaaagtaatctccctaggtgatgcacagtcc
aattacctgctgaccactgccgaaaatgagctaggagtggtggtggcccacagtgaatcg
ggtgtccagatggttcctatcagctggtgtgagatgcagtgccctaagacccacactaaa
gaattccggaaagtggcccgagtacagcccgaattcttgcagacctaa
DBGET
integrated database retrieval system
