Vicugna pacos (alpaca): 102543686
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Entry
102543686 CDS
T08098
Symbol
TRUB1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X2
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpc03016
]
102543686 (TRUB1)
Enzymes [BR:
vpc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
102543686 (TRUB1)
Transfer RNA biogenesis [BR:
vpc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
102543686 (TRUB1)
Prokaryotic type
102543686 (TRUB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
102543686
NCBI-ProteinID:
XP_006200247
UniProt:
A0A6I9I1U5
LinkDB
All DBs
Position
11
AA seq
350 aa
AA seq
DB search
MAAAEAAVGSSSSLKTDTVPVPESAGTAAATAATSSATAAAAAVAAAVRTGSEARVSKPA
LATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTL
DSAARGVLVVGIGKGTKMLTNMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPYDKITQE
DIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEAVEAKPARPVTVYSLSLQKFQP
PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDI
AQSLEHCSSLLPGELALKKSKPEESNEQMLSCEYISLNETKGEDDVIKTF
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctgaggcggcggtggggtcgtcgtcatctttgaaaacagacacagtccca
gttcctgaaagtgcaggaacagctgcagcaacggccgccacctcctcagcgacggctgca
gccgcggcagttgcggccgcggtcaggaccggatccgaagccagggtctccaagcccgcg
ttggctactaagctgctgtccctgagcggcgtgttcgcagtgcacaagcccaaagggccc
acttcagccgagctgctgaatcggctgaaggagaagctgctggcagaagctggaatgcct
tctccagaatggaccaagaggaaaaagcagactttgaagattgggcatggagggacccta
gacagcgcagcccgaggcgtcctggtggttggaatcggaaagggaacaaaaatgttgacc
aatatgttgtcagggtccaagaggtatattgccatcggcgagctggggaaagctactgac
acgctggattctacagggaaagtaacagaagaaaaaccttacgataaaataacacaagaa
gatattgaaggcattctacagaaattcactgggaatataatgcaagtacctcccctctat
tctgcattaaagaaagatggacagagactttcaactttgatgaagagaggggaagcagta
gaagcaaagcctgccaggccagttactgtatacagtctctcgcttcagaagttccagccg
ccatttttcacattagatgttgaatgtggaggaggtttttatatcagaagcttggtcagt
gacattggcaaagaactctcttcctgtgccaatgtgctggagctgacccgaaccaagcag
gggccatttacactagaagagcatgcccttcctgaggacaagtggacgattgatgacatt
gctcagtctcttgagcattgttcatctctcctcccaggagagctggcacttaaaaaatcc
aaacctgaggagtctaatgaacaaatgttgagctgtgagtatataagtctcaatgagaca
aagggagaagatgatgtaattaagacattttaa
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