Vicugna pacos (alpaca): 102543816
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Entry
102543816 CDS
T08098
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X2
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102543816 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102543816 (PRPF4)
Spliceosome [BR:
vpc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
102543816 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
102543816
NCBI-ProteinID:
XP_006211411
UniProt:
A0A6I9IF66
LinkDB
All DBs
Position
4
AA seq
522 aa
AA seq
DB search
MASSRASSTQATKTKAPDDLVASVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGI
EAGNINITSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPIT
LFGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLW
IANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFS
PNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDKKDVNLASCA
ADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILH
QEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGY
HIATGSGDNTCKVWDLRQRRCIYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHP
GWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcacgagcctcctccacgcaggcaaccaaaactaaggcacctgatgactta
gtcgcttctgttgtgaagaaaccacacatctattacggcagtttggaagagaaggagagg
gagcgtctggccaaaggagagtctgggattttgggaaaagaaggacttaaagcaggaatt
gaagcaggaaatattaacataacctctggagaagtgtttgaaattgaagagcacatcagt
gagcgacaggccgaagtattagcagaatttgagagaaggaaacgagcccggcaaatcaat
gtttccacagatgactcagaagtcaaggcttgccttagagccttgggggagcccatcaca
ctttttggagagggtcctgctgaaagaagagaaaggttaagaaatatcctctcagtagtc
ggtactgatgccttaaaaaagaccaaaaaagatgatgagaaatctaagaagtccaaagaa
gagtatcagcaaacctggtaccatgaaggaccaaacagcctgaaggtcgctagactatgg
attgctaattattcactgcccagggcaatgaaacgcttggaagaggcccgtcttcataaa
gagattcctgagacaaccagaacctcccagatgcaagaactgcacaaatctcttcggtct
ttgaataatttctgcagtcagattggggatgatcggcctatctcctactgtcacttcagt
cccaattccaaaatgctggctacagcttgttggagtgggctttgcaagctctggtctgtt
ccagattgcaacctccttcacactcttcgaggccataacacaaacgtaggagcaattgta
ttccatcctaaatctactgtctccttggacaaaaaagatgtcaatctggcctcttgtgct
gctgatggttctgtgaagctctggagccttgacagtgatgaaccagtggcagacattgaa
ggtcatacagtgcgtgtagcccgtgtaatgtggcacccatcgggacgtttcttgggtacc
acctgctatgaccgttcatggcgcttatgggatttggaggctcaagaggagatcctgcat
caggaaggccacagcatgggtgtgtatgacattgccttccatcaagatggctctttggct
ggcactgggggactggatgcatttggtcgagtttgggacctacgcacaggacgttgtatc
atgttcctagagggccacctgaaggaaatctatggaataaatttctcccccaatggctac
cacattgcaactggcagtggtgacaacacttgcaaagtgtgggaccttcgacagcggcgt
tgtatctataccatccctgcccatcagaacttagtgactggtgtcaagtttgagcctatc
catgggaatttcttgctcactggtgcctatgataatacagccaagatctggacccaccca
ggctggtccccactgaagactctggccggccatgaaggcaaagtgatgggcctagacatt
tcctctgatgggcagctcatagccacttgctcatacgacaggacctttaagctctggatg
gctgaatag
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integrated database retrieval system
