KEGG   Vicugna pacos (alpaca): 102544026
Entry
102544026         CDS       T08098                                 
Symbol
MDC1
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of DNA damage checkpoint protein 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
vpc  Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:vpc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vpc03400]
    102544026 (MDC1)
DNA repair and recombination proteins [BR:vpc03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    102544026 (MDC1)
SSDB
Motif
Pfam: BRCT_2 FHA RTT107_BRCT_5 BRCT DUF4766
Other DBs
NCBI-GeneID: 102544026
NCBI-ProteinID: XP_031544138
UniProt: A0A6J3BEF2
LinkDB
Position
20
AA seq 1943 aa
MEDTQVVNWDVEEEEEVEERPSESLGCSLEPLGQLRIFSSSYGPEKDFPLYLGKNVVGRM
PECSVSLPFSSISKQHAVIEILAWDKAPVLRDCGSLNGTQILRPPKVLGPGVSHRLRDRE
IILFADLACQYHRLDVLPPYVSRGPLIVEETPRVQRGTQPHRLLLAEDSEEDVDSPERRV
VKEPRTFSLATVVPESDEEGPSPAPDGPGPPFAFHLNSDTGDKESQQRGSGEASSAAGRG
PAAETEPLKPVTTEIQLEKDQCSSRERNQDTEVKPGARNGVVPVGVILERSQPAEEDSDT
DVDDESRPPGRPAVVHSERAQPSGFIDSDTDEEEEGIPATPAVVPVKKRQIFHEVGTEHP
RAPDEARLQDSPAGSDTDIEEREARLTGPLERSQGSMVIDGDTDDEEEVSAALTLARLRE
SQAVMWNRGSGTEADRAQPVVLLEPSQASAGRDSDTDVEEEGLPLEKIGTVPKGHTDKTH
SEKSQPSLRGSDIEAEEDKSSPGVHLERSQASASVGINPQVEEEVPPGPAVILLDKHQVP
VAWTGQTDVEAEGGPAKLPVVHLEEAQPLPAGGCEPDVEEDTSLAASVVADVSKSQLLAE
RDAGTEWASAVLEQDRALKAGAQDGSQAEPGLHSVSRENLADLVLDTGTPGEPTQSQKER
AQPPPEREREPHVDRTMNSGDNHDDSEDLDLQATQCFVERENPSLKAVPSMEDEPTQAFL
FTLPQEPGPSRCSFQATGALDEPWEVLATQPFCPRESEASVTQPIATHLEAQRSCPSPPG
AALPEQHPESPLGMQGRGMQTVEKDMGTPRETAERVTPETGPLERETKKLPSEGEREDAV
GEEELTRGIQDREQKQVLARDAQRQESDNKVKSASTERDTKNLKVEIETPKEIQEKEAEQ
QILAREVNEREAEKEGSEREHEAGGLEVKVLKVILERNPQRWKAEKGGQDQKGQASSLTP
EPGVGLRDLQGLASAPVASGSQSGGGRGAPVNPRRQQRGQLNCKMPPAEKASRGDQDSPE
ACLPPEVHEASAFLHSPLISQSQKPPAPQSLPSPSPPPLELPIPRTRQNEGQEALGTSLS
SELDPPYPNPKIRPQGSSPVSSLPCEPHSTTPTDQPVRAEPTSRVTRSRTQRSLEMTPVS
VVPTAPELQPSTSTDQSVTLKPTLRATRGRTHRSSVKTSEPIVPITPELQASTPTDQPVA
PELTSRATRGRAHRTSVKTSDPVVPTAPEPQPSTSADQLVTPKSTSRAGRGRTYCSSVKT
SESVVPTTPEPQPSTPTDQPVIPELISRATRGRTHRFSVKTHEPVVPIAPESRPSAPTDQ
PVTPELTSRATRGRTHRSSVKTPEPVVPTASEPQPSTSTDQPVTPKPTSRASRDRTHRSS
PKTPEPRVPTVPERQHSVPTDQPVAPEPXXXXXXXXSSPKTPEPRVPTVPERQHSVPTDQ
PVRPLRPHRGATQSKTCRSSVKTPEPVVPTTSEPQPSTSKDQCLTPEPPSQATRGRIRRS
SVKTSQPVEPTAHDLEPPSLIDQPVTPKVIAQGGQSRTLRSSTVSAVPVSTTPEFQSPEP
TEQPVPPKPIPQANCSRRPRATRKHGSLPAPTVHEPCTTPPEPNSRSSRNQRRGAGRAAE
SVSTIPEPTFAQLPEVPPPAPQIQKGEAAGRSGFTPEPQPKASQNRKRPLATSDSPPLQK
RLRRGEVPQKTAFFTEEENTATRLGKEEDVVMPGAVKRKRGQAEEEPPGTQSRSLRRTKP
NQEPTAPKVLFTGVVDARGERAVLALGGSLASSVAEASHLVTDRIRRTVKFLCALGRGIP
ILSLDWLHQSRKAGCFLPPDEYVVTDPEQEKNFGFSLREALSRAQERRLLEGYEIHVTPG
VQPPPLQMGEIISCCGGTFLPSMPRSYKPQRVVITCSKDFPRCSIPFRVGLPILSPEFLL
TGVLKQEAKPEAFVLSTLKMSSI
NT seq 5832 nt   +upstreamnt  +downstreamnt
atggaggacacccaggttgttaactgggatgttgaagaagaggaggaagtcgaagagaga
cccagtgaatctttggggtgtagcttggagcccctagggcaactgcgtatcttcagtagt
tcctatggaccagaaaaagatttcccactataccttgggaagaacgtggtaggccgaatg
cctgaatgctccgtgtccctgcccttttcatccatctccaaacaacatgcagtgattgaa
atcttggcctgggacaaggcaccggtccttcgggattgtgggagcctcaatggtactcaa
atcctaaggcctcctaaggtcctgggccccggggtgagtcatcgtttgagggaccgggag
attattctctttgccgacttggcctgccaataccatcgtttggatgtccttccaccttat
gtctcccggggccctctaattgtagaggagacacccagggtacagagaggaactcaaccc
cacagacttctgttggctgaggactctgaggaggatgttgattctcctgaaaggcgtgtg
gtgaaagaaccaaggaccttctctttggcaacagtagttccagagagcgatgaagagggg
ccttcccctgccccggatggcccagggccaccttttgccttccatctgaacagtgacaca
ggtgacaaagaaagtcaacaacgaggatcaggggaggcctcctctgctgccggaagaggg
cctgctgcagagacagaaccactgaaacctgtcacaactgaaatccagcttgaaaaggat
caatgttcatcgagggagaggaaccaggacacagaggtcaagccgggtgcaaggaatggt
gtggttccagtcggagtgattctggagaggagccagcctgctgaggaggacagtgacaca
gatgtggacgatgagagcaggcctccaggacggcctgctgtggtccattccgaaagggcc
cagccttctggcttcatagacagtgatactgatgaggaagaagaggggatccctgccacc
ccagccgtagttcctgtgaagaagaggcaaatcttccacgaagttggtacagagcatccc
cgggcacctgatgaggcacgtctgcaggacagcccggctggtagtgatacagatatagag
gaaagggaggcccgcctgacgggtcctctggagagaagccaaggctccatggtgattgac
ggcgacacagatgatgaggaagaagtctcagcggcgctgactctggcccgtctgagagag
agccaggctgtcatgtggaacagaggttcgggcacagaagcggacagggcccagcctgtg
gtccttttggagccaagccaagcctctgcagggagagacagtgacacagacgtggaggaa
gaggggctcccactggaaaagataggaactgttcccaagggtcacacagacaagacacat
tcagaaaagagccaaccttctctcaggggcagtgacatagaggcagaggaagataagagc
tcccctggggtccatctggagagaagccaggcctctgcttcagtgggcatcaacccacaa
gtggaggaagaagtcccaccagggccagcggttatacttctggacaagcatcaggtacct
gtggcgtggacaggtcaaacagatgtggaagcagaaggaggcccagcaaagctgcctgtg
gtgcatctagaggaagcccagcctcttccagctggaggctgtgaaccagatgtggaggaa
gatacctccttagcagcctccgtggtggcagatgtaagcaagagccagctgctggcagaa
agggatgctgggacagagtgggcttcagccgttcttgaacaggacagagctcttaaagct
ggggcccaggatgggtcacaagcggagccaggccttcactctgtctcaagggagaactta
gcagatctggtgctggacacaggcactccaggggaacccactcagtcacaaaaagagaga
gcccagccccccccagaaagggagagagaaccacatgtggacaggaccatgaactctgga
gacaaccatgatgattctgaagacctggacctacaagctacccagtgctttgtggagaga
gagaacccaagcctgaaagcagtccccagcatggaggatgaacccacccaggccttcctg
tttactctgccccaggagcctggcccttcccgttgcagcttccaggccacaggtgccctg
gatgagccatgggaggtcttggctacacagccattctgtccaagagagtctgaggcttct
gtgacccagcccattgccacccaccttgaggcccaaagatcttgtccttctccacctggg
gcagcactgccagagcaacatccagagagcccactggggatgcagggcagagggatgcag
actgtggagaaagacatgggtacaccaagagaaacagcagagagggtgacccctgagaca
gggccattggagagggaaaccaagaaactgccatcagagggagagagggaagatgcagtg
ggagaggaagaattaaccagggggatacaggacagagaacaaaaacaggtgttagctaga
gatgctcagagacaagagtctgacaacaaagtgaaaagtgcaagtactgaaagggatacg
aagaatttgaaggtagaaattgagacacccaaggaaatacaagagaaagaggcagagcag
caaattcttgcaagagaagtaaatgaaagagaagcagagaaagaagggtcagagagagaa
catgaggcaggtgggttagaagtaaaggtactcaaagtgatactggagagaaacccacaa
agatggaaggcagagaaggggggccaggaccagaaaggccaggcctccagtctgacacca
gaacctggagtggggttgagggaccttcagggacttgcttcagcaccagtagcttctggg
agccagtcaggtggaggaaggggagccccagtgaaccccaggaggcagcagagaggccag
ttgaactgcaagatgccacctgctgagaaagcttccaggggtgatcaggattccccagaa
gcttgtttgcctcctgaagtacatgaagcctcagcctttctccacagccccctcatctct
cagagccaaaagcctcctgcacctcagtctctcccttctccctctcctcctcctttagaa
ctgcccattcccaggaccaggcagaatgagggtcaggaagcactagggacttccctttcc
tcagagctggaccctccctacccaaaccccaaaatcaggccccaggggtcctctccagtt
tcttctctaccctgtgagccccactctaccactcccacagaccagcctgtcagggctgag
cccacatctagggtcactcggagcaggacacagaggtccttggaaatgacccctgtatca
gttgtccccacagcccctgagctccagccttccacctccacagaccagtctgtcaccctt
aagcccacacttcgggccactcggggcaggacacataggtcctctgtcaagacttccgaa
ccaattgtccccataacccctgaactccaggcttccacccccacagaccaacctgttgcc
cctgagctcacatctagggccactcggggcagggcacacaggacttctgtcaagacttct
gacccagttgtccccacagcccctgagccccagccttctacttctgcagaccagcttgtc
acccccaaatccacatctcgggccggtcgaggcaggacatattgttcttctgtcaagact
tctgaatcagttgttcccacaacacctgaacctcagccttccacccccacagaccagcct
gtcatccctgagctcatatctagagctactcggggcaggacacataggttctctgtcaaa
acccatgaaccagttgtccccatagcccccgagtctcggccttctgcccccacagaccag
cctgttacccctgagctcacatctagggctactcggggcaggacacataggtcttctgtc
aaaacccctgaaccagttgtccccacagcttctgagccccagccttccacttccacagac
cagcctgtcacccccaaacccacatctcgagccagtcgagacagaacacacaggtcttct
cccaagactcctgaaccacgtgtccccacagtccctgagcgccagcattctgtccccaca
gaccagcctgttgcccctgagcccnnannnnnnnnnnnnnnnnnnnngtcttctcccaag
actcctgaaccacgtgtccccacagtccctgagcgccagcattctgtccccacagaccag
cctgttcgccccctgcgcccacatcgtggggccactcagagcaagacatgtaggtcttct
gtcaagacccctgaaccagttgttcccacaacctctgagccccagccttccacctctaaa
gaccagtgtctcacccccgagcctccatctcaggccactcggggcaggatacgtaggtcc
tctgtcaagacatcccaaccagttgaacccacagcccatgacctcgaacctccctccctc
atagaccagcctgtcacccctaaggtaatagctcagggtggtcagagcaggacactaagg
tcttctacagtaagtgctgtgccagtttctaccacccctgaattccagtctcctgaaccc
acagaacagcccgttccccctaagcctatccctcaagccaattgcagcaggaggccgagg
gccaccaggaagcatgggtctctcccagctcccactgttcatgagccctgcactacaccc
cctgaacctaactcccggtcctcgaggaaccaaagacgaggagcagggagagcagcagag
tccgttagcaccattcctgagcctacctttgcccagcttcctgaggtgccccctcctgct
ccccagatccaaaagggggaggcagcaggtagatctggcttcaccccagagccccagcct
aaggcctctcaaaaccgcaagaggcctttagctacttcggattcacccccacttcaaaaa
cggctccgaaggggagaagtgccccagaagacggcattcttcacagaagaagaaaatact
gcaacgaggctgggcaaggaagaggatgtagtgatgccaggagcagtcaagagaaagaga
ggccaggcggaggaggagcccccaggaacacagagccgcagcctccgacggaccaaacct
aaccaagagcccacagcccccaaagtgctcttcacaggcgtggtggatgctcgtggagag
cgggcagtgctggccctggggggcagtctggccagctcagtggctgaggcttcccacctg
gtgactgatcggatccgtcggactgttaagttcctgtgcgccttggggcggggcatcccc
atcctctccctggactggctgcaccagtcccgcaaggcaggttgcttcttgcccccagat
gagtatgtggtgactgatcccgagcaggagaagaactttggcttcagcctccgggaggcc
ctgagccgagctcaggagcgcaggctgctggagggctatgagattcacgtgaccccagga
gtccagccaccacccctgcagatgggcgagatcatcagctgctgtggaggcaccttccta
cccagcatgccccggtcctataagcctcagagagtggtgatcacatgctccaaggacttt
cctcgatgttccattccatttcgggttgggctgcccatcctctcacctgagttcctgctg
acaggagtactgaagcaggaagccaagccagaggcctttgtcctctccactttgaaaatg
tcatccatctga

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