KEGG   Vicugna pacos (alpaca): 102544082
Entry
102544082         CDS       T08098                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
vpc  Vicugna pacos (alpaca)
Pathway
vpc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vpc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102544082 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vpc03041]
    102544082 (SNRNP40)
Spliceosome [BR:vpc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    102544082 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    102544082 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_EIPR1 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 102544082
NCBI-ProteinID: XP_006196956
UniProt: A0A6I9HXK5
LinkDB
Position
13
AA seq 358 aa
MIEQQKRKGPELPLVPVKRQRHELLLGAAGSSPGAGQQQAAPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPSGSTLASAGFDRLILLWNVFGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaagcgcaagggcccagagttgccgctggtcccagtcaagcggcag
cggcatgaattgctgttgggagcagcggggtcgagccccggagccgggcagcagcaggcg
gcgccgggagctttgctgcaagcggggcctccaagatgttcctctcttcaagccccaatc
atgcttctttcaggacatgaaggggaggtgtattgctgcaagtttcaccccagtggatcc
accttagcatctgcaggatttgaccgactgattttgttgtggaatgtctttggtgactgt
gacaactatgctacattgaaaggacacagtggagcagtgatggaactgcattataacacc
gatgggagtatgctcttctcagcatccacagataaaactgtggctgtgtgggacagtgaa
acaggcgagagggtcaaaagactgaagggacacacttcctttgtgaattcctgttatcca
gccaggaggggcccccagcttgtctgcactggcagtgatgatggtacagttaagctttgg
gacatccgtaagaaagcagccatccagacatttcagaacacctaccaagtgttagctgtg
accttcaatgacacaagtgatcagattatttctggtggaatagacaacgatatcaaggtc
tgggacctgcgccaaaacaagctgacctacacaatgagaggccacgcagattcagtgact
ggcctgagtttaagttctgaaggctcttatctcttatccaatgcaatggacaatacagtg
cgggtctgggatgtccggccgtttgctcccaaagagaggtgtgtgaagatatttcaagga
aatgtacacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaag
atagcagctggctcagccgacaggtttgtgtatgtgtgggataccacaagcaggaggatt
ttgtataaactaccgggccacgctggctccatcaatgaagtggctttccaccctgacgaa
cccatcattctctcagcatccagtgacaagagactatatatgggagagattcagtga

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