Vicugna pacos (alpaca): 102544318
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Entry
102544318 CDS
T08098
Symbol
USP39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102544318 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102544318 (USP39)
Spliceosome [BR:
vpc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
102544318 (USP39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
102544318
NCBI-ProteinID:
XP_006203861
UniProt:
A0A6I9I849
LinkDB
All DBs
Position
28
AA seq
565 aa
AA seq
DB search
MSGRSKRESRGSTRGKRESESRGSSARVKRERDRERETEAPSSRGSPVRVKREVEPASAR
EAPAPVVPAVRVKREREADEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
REYLSEEVQAVHENTTYDLIANIVHDGKPAEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
MITLSEAYIQIWKRRDNDETNQQGA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtccggccggtccaagcgggagtctcgtggttccacccgtgggaagcgcgagtccgaa
tcgcggggcagctcggctcgcgtcaagcgggagcgagatcgggagcgggagactgaggcg
ccgagctcccggggcagcccggtgcgcgtgaagcgggaggtcgagccggcgagcgcgcgc
gaggccccggcacccgtggtcccggcggtgcgggtgaagcgggagcgcgaggccgacgag
gactcggagcctgagcgggaggtgcgagcaaagaatggacgcgtggattctgaggaccgg
aggagccgccactgcccgtacctggataccattaacaggagtgtgctggacttcgacttt
gagaaactgtgttccatctctctctcacatatcaatgcatatgcctgtctggtgtgtggc
aagtactttcagggccggggtttgaagtctcatgcctacatccacagtgtccagtttagt
caccatgtcttccttaacctccacaccctcaagttttactgtctcccagacaactatgag
atcattgactcctcgctggaggatatcacgtatgtgttgaagcccactttcacgaagcag
cagattgctaacttggacaagcaggccaagttgtcccgggcgtacgatggcaccacttac
ctgccaggcatcgtgggcctgaacaacataaaggccaacgactacgccaacgccgtcctt
caggctctgtctaacgtccctcctctccggaactacttcctggaagaagacaattacaag
aacatcaagcgtccccctggggacatcatgttcctgttggtccagcgctttggagagctg
atgagaaagctctggaaccctcgaaatttcaaggcccatgtctctccccatgagatgctt
caggctgttgtcctttgcagcaagaagacttttcagatcaccaagcaaggggatggagtt
gactttctgtcctggtttttgaatgctctgcactcagctctggggggcacaaagaagaaa
aaaaagactattgtgactgatgttttccaggggtccatgaggatcttcactaaaaagctt
cctcatcctgatttgccagcagaggaaaaagagcagctgctgcacaatgacgagtaccag
gagacgatggtggagtccaccttcatgtacctgacgctggacctccccaccgccccgctc
tacaaggacgagaaggagcagctcatcatcccccaggtgcctctcttcaacatcctggcc
aagttcaacggcatcaccgagaaggagtataagacctacaaggagaacttcctgaagcgc
ttccagctcaccaagctgcctccatatctcatcttttgtattaagagattcacgaagaac
aatttctttgtggagaagaatccgactatagtcaacttccctattaccaacgtggatctg
agagagtacctgtctgaggaggtgcaggcggtgcacgagaacaccacctacgacctcatc
gccaacatcgtgcacgacggcaagccggccgagggctcctaccgcatccatgtgctgcac
cacgggacgggcaaatggtacgagttacaagacctccaggtgactgacatccttccccag
atgatcacactgtcggaggcttacattcagatctggaagaggcgagataatgatgaaacc
aaccagcagggggcttga
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