Vicugna pacos (alpaca): 102545101
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Entry
102545101 CDS
T08098
Symbol
PRPF39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102545101 (PRPF39)
Spliceosome [BR:
vpc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
102545101 (PRPF39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
TPR_MalT
FAT
Motif
Other DBs
NCBI-GeneID:
102545101
NCBI-ProteinID:
XP_006199875
UniProt:
A0A6I9I1C5
LinkDB
All DBs
Position
6
AA seq
667 aa
AA seq
DB search
MQNSHMDEYRNSSNGSTGNSSEVVVEQSADFSTEIMNVTEMEQSPDGSPNVNTTTEENET
ANTVDIPVTETEANFPPEYEKFWKTVESNPQDFTGWVYLLQYVEQENHLMAARKAFDKFF
IHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDP
ETNSTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSH
HFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKL
ITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEF
EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKKPM
VHMLWAAFEEQQGSINEARNILRTFEECVLGLAMVRLRRVSLERRHGNMEEAERLLQDAI
KNAKSNNESSFYAIKLARHLFKIQKNFPKSRNVLLEAIERDKENTKLYLNLLEMEYSGDL
KQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQD
SLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNYGQ
YYPPPPT
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattctcacatggatgagtacagaaattctagcaatggcagcacaggcaacagt
tcagaggtagtggtagaacagtctgctgatttcagtactgagattatgaatgttacagaa
atggaacagtcacctgatggatctcctaatgtgaatacaactacagaggaaaatgaaaca
gcaaatactgtggacattccagtgacagaaacagaagcaaatttccctccagaatatgaa
aagttttggaaaactgtagaaagtaatcctcaggattttacaggctgggtatatttgctt
cagtatgtagaacaggagaatcacttgatggctgccaggaaagcatttgacaaatttttc
atacactatccgtattgctatggttattggaaaaagtatgcagaccttgaaaagcggcat
gacaacattaaacaatcagatgaggtgtatcgccgggggcttcaggcaatacctcttagt
gttgacctttggatacattatataaacttcttaaaagaaacattggaccctggtgatccc
gagacaaacagtacaataagaggaacttttgagcatgctgttctagctgcaggaacagat
ttccgatctgacagactgtgggagatgtatataaactgggaaaatgaacaaggaaacctg
agagaagttacagctatatatgatcgtattcttggtattccaacacagctgtatagtcat
cattttcagagatttaaagaacatgtacagaataacttgcctagagatcttctaactggt
gaacagtttattcagctgcgaagggaattagcttctgtaaatgggcatagtggtgatgat
ggtcctcctggagatgatctaccatcaggaatcgaagacataactgatccagcaaagcta
attacagaaatagaaaacatgagacacagaatcattgaaattcatcaagaaatgtttaat
tataatgagcatgaagttagtaaaaggtggacatttgaagaaggtattaaaagaccttat
tttcatgtgaaaccattggaaaaggcacaactaaaaaactggaaagaatacttagaattt
gaaattgaaaatgggactcatgaacgagttgtggttctctttgaaagatgtgttatatca
tgtgccctctatgaggagttttggattaagtatgccaagtacatggaaaaccatagcatt
gaaggagtgaggcatgtcttcagcagagcttgcacaattcatctcccaaagaaacccatg
gtgcatatgctttgggcagcttttgaggaacagcagggtagtattaatgaagccaggaat
atcttgagaacatttgaagaatgtgttctaggattggcaatggttcgtttgagaagagta
agtttagaacgacggcatggaaatatggaagaagctgaacgcttgctacaagatgccatt
aagaatgccaagtcaaataatgagtcatcattttatgctatcaaactagctcgacatctt
ttcaaaatacagaaaaactttccaaaatcaagaaatgtgcttttggaagcaattgaaaga
gacaaagagaacacaaagttatacctcaatttacttgaaatggaatatagtggtgacctc
aaacaaaatgaagaaaatatcctaaattgttttgacaaagctatacatggttcattacct
attaaaatgagaattacattttctcagagaaaagtggaatttcttgaagattttggttca
gatgttaataagcttctgaatgcttatgacgaacatcaaacactcctaaaagaacaggat
tctttaaaaaggaaagcagaaaatggatcagaggaaccagaggaaaagaaagcacacaca
gaagatacaacttcatcatctacacagatgattgatggtgacttacaagcaaatcaagct
gcatataattatagtgcctggtatcaatacaattatcagaatccttggaattatggacaa
tactatcctccccctccaacctga
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