Vicugna pacos (alpaca): 102545180
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Entry
102545180 CDS
T08098
Symbol
DDX39A
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102545180 (DDX39A)
Enzymes [BR:
vpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102545180 (DDX39A)
Spliceosome [BR:
vpc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102545180 (DDX39A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102545180
NCBI-ProteinID:
XP_006218367
UniProt:
A0A6J0B2Q8
LinkDB
All DBs
Position
22
AA seq
427 aa
AA seq
DB search
MAEQDVENELLDYEEDEEPQAPPENAPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR
NRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacaggatgtggaaaacgagcttctggattatgaggaagatgaagagccccag
gctcctccagagaacgccccagctcctcccaagaaagatgtcaaggggtcctacgtttcc
atccacagctctggtttccgggacttcctcctgaagccagagctcctgagggccatagtg
gactgtggcttcgagcatccatctgaggtccagcacgagtgtattccacaagccatcctg
ggcatggatgtcctgtgccaagccaagtcagggatggggaagacggcagtttttgtgttg
gccaccctgcagcagattgagcccgtcaacggtcaggtgacggtcctggttatgtgccac
acccgggagctggccttccagatcagcaaggagtatgagcgcttctccaagtacatgccc
agtgtcaaggtgtctgtgttcttcgggggcctctctatcaagaaagatgaggaggtgttg
aagaagaactgtccccacgttgtggtggggacaccaggtcggatcctggcgctggtgcga
aacaggagcctgaacctgaggaacgtgaagcacttcgtgctggatgaatgcgacaagatg
ctggagcagctcgacatgcggcgggacgtgcaggagatcttccgtctgaccccgcacgag
aagcagtgcatgatgttcagcgccaccctgagcaaggagatccggcctgtctgcaggaag
ttcatgcaagaccccatggaggtgttcgtggacgatgagaccaagctcacgctgcatggg
ctgcagcagtactatgtcaaacttaaggacagtgagaagaaccgcaagctctttgacctc
ctggacgtgttggagtttaaccaggtggtgatatttgtgaagtcggtgcagcgctgcatg
gccttagcccagctcctcgtggagcagaacttccctgccatcgccatccacaggggcatg
gcccaggaggagcgcctgtcacgctatcagcagttcaaggacttccagcggcggatcctg
gtggccaccaacctctttggccgagggatggacattgagcgtgtcaacattgtcttcaat
tatgatatgcccgaggactcagatacctacctccaccgggtggcccgtgcaggtcgcttt
ggtaccaaaggcctggctatcactttcgtgtctgatgagaatgatgccaaaatcctcaat
gatgttcaggaccggtttgaagtgaacgtggcagagcttccagaagaaatcgacatctcc
acatacattgaacagagccggtaa
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