Variovorax paradoxus B4: VAPA_1c01860
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Entry
VAPA_1c01860 CDS
T02835
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAPA_1c01860 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpd03019
]
VAPA_1c01860 (recQ)
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c01860 (recQ)
Enzymes [BR:
vpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAPA_1c01860 (recQ)
Messenger RNA biogenesis [BR:
vpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VAPA_1c01860 (recQ)
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VAPA_1c01860 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AGU47316
UniProt:
T1X4F2
LinkDB
All DBs
Position
1:complement(188163..190064)
Genome browser
AA seq
633 aa
AA seq
DB search
MSSLAPLPLDAPGSSSAPADILHEVFGYSQFRGPQQDIVDHVVGGGDALVLMPTGGGKSL
CYQIPAIARQRAGRGVSVVVSPLIALMHDQVGALHEAGVNAAFLNSTLDWEQTQDVERRM
LRGEITLLYAAPERVNTPRFLSQLDSLKERGKLSLFAIDEAHCVSQWGHDFRPEYRALTV
LHERYPGVPRIALTATADALTRADIVERLQLEEARQFVSSFDRPNIRYTIVEKKDATTQL
LRFIERDHEGDAGVVYCQSRKRVEDVAVMLRDAGINALPYHAGLDAAVRQKHQDRFLREE
GVVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRAGRDGAPADAWMTYGLQDVV
NQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLLGYFGEKSTPCGNCDNCLNP
PQVWDGTDAARKLLSTIYRVQQLSGISFGAGHIMDILRGKETEKVKQFGHERISTFGIGA
EFSEVQLRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVLKGEANVTLRESVSSPAARGG
KPRREKAARGAPSPAAAALDADGQKRFEALKAWRAEVAREHNLPAYVIFHDATLAAISER
APATLEDLQGISGIGTKKLEAYGSEVLRVCSAF
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcgctcgctcccctccccctcgacgcccccggcagcagcagcgcccccgccgac
atccttcacgaagtcttcggctattcgcagttccgcgggccgcagcaagacatcgtcgac
cacgtggtgggcggcggagacgcactggtgctgatgcccacgggcggcggcaagtcgctg
tgctaccagatcccggccattgcgcggcagcgtgcggggcgcggtgtctcggtggtggtg
tcgccactgatcgcgctgatgcacgaccaggtcggcgcgctgcacgaggccggggtcaac
gcggccttcctgaattccacgctcgactgggagcagacgcaggacgtggagcgccgcatg
ctgcgcggcgagatcacgctgctgtatgcagcgcccgagcgcgtgaacacgccgcgcttt
ctctcgcagctcgattcgctgaaggagcgcggcaagctctcgctgttcgcgatcgacgag
gcgcattgcgtgagccagtggggccacgacttccggcccgaataccgcgcgctgacggtg
ctgcacgagcgctatccgggcgtaccgcgcatcgccctcaccgccaccgccgatgcgctc
acgcgcgccgacatcgtcgagcggcttcagttggaagaagcgcgccagttcgtctccagc
ttcgaccggccgaacatccgctacaccatcgtcgagaagaaggacgcgaccacgcagctg
ctgcgcttcatcgaacgcgatcatgagggcgacgctggcgtggtctattgccagtcgcgc
aagcgcgtggaagacgtggccgtgatgctgcgcgatgccggcatcaacgcgctgccctac
cacgcgggcctggacgcggcggtgcgccagaagcaccaggaccgcttcctgcgcgaagag
ggcgtggtgatggtcgcgaccatcgccttcggcatgggcatcgacaagcccgacgtgcgc
ttcgtcggccacctcgacatgcccaagaacatcgagggctactaccaggaaaccggccgc
gcgggccgcgatggcgcgccggccgacgcctggatgacctacggcctgcaggacgtggtg
aaccagcgccgcatgatcgacgagagccccgcgggcgaagagttcaagcaggtgatgcgc
ggcaagctcgatgcgctgctctcgctggccgaggcgagcgactgccgccgcgtgcgtctg
ctcggctacttcggcgagaagagcacgccctgcggcaactgcgacaactgcctgaacccg
ccgcaggtgtgggacggcaccgatgccgcgcgaaagctgctctccaccatctaccgtgtg
cagcagctcagcggcatcagctttggcgcgggccacatcatggacatcctgcgcggcaag
gaaaccgagaaggtcaagcagttcgggcatgagcgcatcagcaccttcggcatcggcgcg
gagttcagcgaagtgcagttgcgcggcgtgctgcggcagctcatcgccacgggcgcgctg
gccgtcgatgcggaagccttcaatacgctgaagctcacggaaggctcgcgcgcagtgctc
aagggcgaagcgaacgtgacgctgcgcgagtcggtttcgtcgccggccgcgcgcggcggc
aagccccggcgcgagaaagcggcgcgcggcgccccgtctcccgcggccgcggcactcgac
gccgacggccagaagcgcttcgaggcgctcaaggcctggcgcgcggaagtggcgcgcgag
cacaacctgccggcctacgtgatctttcacgacgccacgctggcggcaatttccgaacgc
gcgcctgcgacgctcgaagacctgcagggcatcagcggcatcggcaccaagaagctcgag
gcctacggctccgaggtgctgcgcgtctgcagcgcgttctag
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