Variovorax paradoxus B4: VAPA_1c03020
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Entry
VAPA_1c03020 CDS
T02835
Symbol
rhs
Name
(GenBank) putative protein Rhs
Organism
vpd
Variovorax paradoxus B4
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
DUF6156
OCRE
Motif
Other DBs
NCBI-ProteinID:
AGU47432
UniProt:
T1X3D8
LinkDB
All DBs
Position
1:complement(320800..325134)
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AA seq
1444 aa
AA seq
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MFFAAKHFDPQLGIDAHTYLAPPGVWPTVHIGIVMDPFDYLPTIQVSPENPIVKGMTAVD
GAMQAGLDTIGESTAAPEVPAPPGAPAGGGEMPASIPFPLGATVEVAGVRRANAGTGGVD
FHILVGAPMPVIKGPGGPQFEDELFMGSRIVLADGEPFSRISVPVLACNVVGLVPPLRKK
KAVKPQRLSLMLPTTFNVAIPPQVFVGGPPTISWGAMIQRGLFKALGRAYTRVARRVFKN
MPPGFLKCQVLRAEPVDIRDGSVSVTHEDFSIPGRLPLSWTRVYASRDHSLDGHCGRGWQ
TPADVRLMVEADGLLSLQGPEEFALFPALPQAEGQQVLDVVDGARLMRQGGELVVRFKDG
LRYHFEEALSPEGALQATPLPITRIEDACGNHWRFVRQGGDLVRIAESGMDGLPGRSIEV
QSRSGYIESMALRDPATGQEHPLVRYRHADGDLLAAIDALGAAREFAYLQHRMARHTDRT
GLSFHYAYDEQWRVVHAWGDGGLHDYRFAYNAALRQTEVTNSLGHLTVVKFDEAGLPLAE
IDPLDGVTTFEYDDVGRTVAVTEPEGLRTGFSYDARGNLLNLRQADGSTIGCEYDDDDRL
LAVVDPLGHRWQSAWDACGLPLSQSDPLGAVTRFEHDRHGQLVRHVNARGAITQLRYSRH
GQLDSLTDSLGHTSHYEHDALGRLLSQTDALGQKRRYRCDAKGRLLRIEHPDGLQIQYGY
DAEDQLVLHVDEAGAETRVEYVGLGEVSRRILPDGHVLHYHYDTEEQLVGLTNQRGERYA
LRRDALGRVVEEVDFWGQSRHYEYNAAGHLGSTVDPLGQRITFATDKMGRITRKTLGDPL
HAGSQLEENFSYDRSGQLVEMRNSAAHVRRRFDTAGRLLEESQNGFRITYRYDEAGNCTL
RETSAGNRVTMDHDARDQVVTVGINDEVPILIERDVLGRIARERLSEHVVRQARYDAHDQ
LTAQTVLRDAAPLFSTQYDYDRTGNLTRRRDSDAGSDEYGYDVLGRLLQHIDPAGKARHF
PHDAASDRLRTSVRRTPARSSSGGAEGSKEQWTREGTCDGVHYVFDRAGDLVRQGHPEQA
SPDDLEMVWDANHRLIESRRGNSVTHYGYDSMGRRVFKRSASHTIWFFWDGDALLGEVRQ
PHGQQTALQENGEVAALHRRRTRHRHGPQVPCERLREYLFYPGTHVPLALIDGLVDAASD
PSRQPAKCVAHYHVEPNGTPSRLTDASGEVIWSARPTGWGESIEDRVGRISNPIRLQGQY
LDEESGLHYNRNRYYDPHIGAFISQDPIGLAGGENFYQFAPNALGWIDPLGLRCLSKRQR
ARLNKIRGLSKKRHASGKSYNAQITARLTQAEARELAEEFVGPGFKETTIKGVWLLRSAD
GCRKVRGPSRKPTDQGKNIHPDSKQPYSMTGWQVNFEDRDPVKGPIAPGATRPYQANVHV
DVEP
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
ttgttcttcgcggccaagcacttcgacccccagctgggcatcgatgcccacacctacctg
gcgccgcccggcgtgtggcccacggtgcacatcggcatcgtgatggacccgttcgactac
ctgccgaccatccaggtctcgcccgaaaacccgatcgtgaaaggcatgacggccgtggac
ggcgccatgcaggcgggcctggacaccatcggcgaaagcaccgccgcccccgaggttccg
gcgccaccgggcgcgccggccggcggcggcgagatgcccgcgagcatcccctttccgctc
ggcgccaccgtcgaggtggcgggcgtgcgccgggccaacgccggcacgggcggcgtggac
ttccacatcctcgtcggcgcccccatgccggtgatcaaggggcccggcggcccgcagttc
gaggacgagcttttcatgggcagtcgcatcgtgctggccgacggcgagcccttctcgcgc
atcagcgtgccggtgctggcctgcaacgtcgtgggcctggtgccgccgttgcgcaagaag
aaggcggtcaagccccagcggctgagcctgatgctgccgaccaccttcaacgtcgccatt
ccaccgcaggttttcgtgggcgggccgccgaccatctcgtggggcgcgatgatccagcgc
gggctgttcaaggcgctgggccgggcctacacgcgcgtcgcacggcgcgtgttcaagaac
atgccgccgggcttcctcaagtgccaggtgctgcgcgccgagccggtggacattcgcgat
ggcagcgtctcggtgacgcacgaggacttcagcattccggggcgcctgccgctgagctgg
acgcgcgtctatgcatcgcgcgaccacagcctggacggccactgcggccggggctggcag
accccggcggatgtgcgcctgatggtggaagccgacggcctgctcagcctgcagggaccg
gaagagttcgcgctgttccctgcgctgccgcaggccgagggacagcaggtgctcgacgtg
gtggacggggcgcggctgatgcgccagggcggcgaactggtggtgcgcttcaaagacggc
ctgcgctaccacttcgaggaggcgctgtcgcccgaaggagcgctgcaggccacgcccctg
cccatcacgcgcatcgaggatgcctgtggcaaccactggcgcttcgtgcgccaaggcggc
gatctggtgcgcatcgccgaaagcggcatggacggcctgccgggccgcagcatcgaggtg
cagtcgcgcagcggatacatcgagtccatggcactgcgcgacccggccaccggacaggag
catccgctggtgcgctaccgccatgccgacggcgacctgctggcggccatcgacgcgctg
ggcgctgcgcgcgaattcgcgtacctgcagcaccgcatggcgcgccacacggatcgcacg
ggcctgtccttccactacgcgtacgacgagcagtggcgggtggtgcacgcctggggcgac
ggcgggctgcatgactaccgcttcgcttacaacgcggcgctgcggcagaccgaggtcacc
aactcgctcgggcatctcacggtggtcaagttcgacgaggcggggctgccgctggccgag
atcgaccctttggatggcgtgacgacctttgagtacgacgatgtggggcggaccgtggcg
gtcaccgagccagaaggactgcgcaccggcttcagctacgacgcgcgaggaaatttgctg
aacctgcgacaagccgacggcagcaccatcggctgcgagtacgacgacgacgaccggctg
ctcgccgtggtcgatccgctgggccaccgctggcagtcggcgtgggacgcgtgcgggctg
ccgctcagccagagcgacccgctcggcgccgtcactcgcttcgagcacgaccgccatggc
cagttggtacgccacgtcaatgcgcgcggcgcaatcacgcagctgcgctacagccggcat
ggccagttggacagcctgaccgattcgctgggtcacaccagccactatgagcacgatgcg
ctgggccggcttctgagccagaccgacgcgctgggccagaagaggcgctaccggtgcgac
gccaaagggcggctgctgcgcatcgagcaccccgatggcttgcagatccagtatggctac
gacgccgaagaccaactggtcctccacgtcgacgaagccggcgcagaaacacgcgtggag
tacgtgggcctgggcgaagtcagccggcgcatcctgcccgacggccatgtcttgcattac
cactacgacaccgaagaacagctcgtcggcctaaccaatcagcggggcgagcgctatgca
ttgcggcgcgatgcgctggggcgcgtcgtcgaggaagtcgatttctggggccaatcgcgc
cactacgaatacaacgctgccggccatctgggcagcacggtggacccgctcgggcaacgc
atcacctttgcgaccgacaagatgggccgcatcacgcgcaagaccttgggcgatccgctg
cacgccggctctcagctggaggagaatttttcctatgaccgcagcggacagctggtcgag
atgcgcaacagcgctgcgcacgttcggcgccggttcgacaccgccggccgcctgctggaa
gagtcgcagaacgggtttcgcatcacctaccgatacgatgaggcaggcaactgcaccctg
cgggaaacctcggctggcaatcgcgtgaccatggatcatgacgcgcgcgatcaggtggtg
acggtcggcatcaacgacgaggtgccgattctcatcgagcgcgatgtcctcggccgaatc
gcgcgggaacggttgagcgaacacgtcgtgcgccaagcccgctacgacgcgcatgaccaa
ctgacggcgcagacagtactcagggatgcagcgccgctgttcagcacccagtatgactac
gaccgcacaggaaacctcacccgccggcgcgacagcgacgccggcagcgacgagtatggc
tacgacgtgttgggccgcctgctgcagcatatcgatcccgcaggaaaggccaggcacttt
ccgcatgacgcggcaagcgaccgcctgcgaacttcagtccgccggacaccagcacgcagt
tcctccggaggcgcggaaggaagcaaggagcagtggacacgagaaggcacctgtgacggc
gtgcactacgttttcgaccgggcaggcgatctcgtccgccagggccacccggaacaggcg
tcaccggacgaccttgaaatggtttgggatgccaaccaccggttgatcgaaagccgccgc
ggcaacagcgttactcactatggatacgacagcatgggccgccgcgtgttcaaacgcagc
gcgtcgcacacgatctggtttttctgggacggggatgcgttgctgggcgaagtgcgccag
ccccatggccaacaaacggcgcttcaggagaacggcgaagttgcggcgttgcaccgtagg
cgtacgcggcatcggcatggcccccaggtgccatgcgagcgcctgcgcgagtacctgttc
tacccagggacccatgtgccgctcgccctgatcgacggcctcgtcgatgcggcttccgac
ccatcgcggcagccggcgaagtgcgtcgcccactaccacgtcgaacccaacggcacgccc
agccgcctgaccgacgcgtcgggtgaagtgatctggtccgccagacccacgggctggggc
gaatccattgaggatcgcgtcgggagaatcagcaacccgatccgcctccaggggcagtac
ctcgacgaagagtcaggtctccactacaacaggaacaggtactacgacccgcacattggc
gccttcatcagtcaggaccccattggcctggctggaggagagaacttctaccagttcgcc
ccgaacgcgctgggctggatcgacccgctgggcctccgatgcctgtcgaagcggcaacgg
gcccggctgaataagatcagagggctttccaagaagcggcatgcctcgggcaagagctac
aacgcgcagatcactgcacgcctgacacaggcggaagctcgtgaactggcggaagaattc
gtaggcccgggcttcaaggaaacgacgataaagggagtgtggctgctgagatccgcagac
ggctgtcgaaaggtgcgtggccccagccggaaaccgaccgaccaggggaagaatattcat
ccggacagcaaacaaccctactccatgaccggctggcaggtgaatttcgaggatcgagat
ccggtcaagggaccgatagcgccaggggcgacgcgcccctaccaagcgaacgttcacgtc
gatgtggagccttga
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