Variovorax paradoxus B4: VAPA_1c03050
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Entry
VAPA_1c03050 CDS
T02835
Symbol
radA
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c03050 (radA)
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VAPA_1c03050 (radA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Zn_ribbon_LapB
AAA_22
ChlI
AAA_16
Lon_C
DnaB_C
RecA
AAA_30
GvpD_P-loop
DUF7125
Rad51
NPHP3_N
SLFN-g3_helicase
NTPase_1
AAA_14
AAA_5
AAA_29
AAA_24
ATPase_2
nSTAND3
DUF7129
NACHT
Motif
Other DBs
NCBI-ProteinID:
AGU47435
UniProt:
T1X5I0
LinkDB
All DBs
Position
1:329397..330785
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AA seq
462 aa
AA seq
DB search
MAKEKSLFVCSECGGTSPKWLGKCPSCGAWNTLIEQVAGSSGPANNRFGTQYAALAGVSE
LATLSEIEATDVARTPTGLDELDRVLGGGIVSGGVTLIGGDPGIGKSTLLLQAVDALQRA
GQNALYVTGEESGAQVSLRSRRLGLDHSQVQVLAEIQLEKIIATLDATRPAIAVIDSIQT
VYSDQLTSAPGSVAQVRECAAHLTRFAKTSGTAVVLVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVTNPSAIFLSQHAEPVPGSVVL
VTLEGTRPMLVEIQALVDNGGPSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNA
VGGVRISEPAADLAVMLAITSSLRGKPLPRGFIAFGEVGLAGEVRPAPRGQERLREAAKL
GFSVAVVPKANAPRKGTKEIEGLTIHAVERIEEAMDVVRRLD
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggaaaaatccctcttcgtctgcagcgaatgcggcggcaccagccccaagtgg
ctcggcaaatgcccgagctgcggcgcctggaacactctcatcgaacaggtggcgggcagc
agcggcccggccaacaaccgtttcggcacgcagtacgccgcgctcgcgggcgtgtccgaa
ctcgccacgctgtcggaaatagaagcgaccgacgtcgcacgcacgcccaccgggctcgac
gagctcgaccgcgtgctgggcggcggcatcgtgtcgggcggcgtcacgctgatcggcggc
gacccgggcatcggcaagtcgacgctgctgctgcaggccgtcgatgcgctgcagcgcgcg
gggcagaacgcgctctacgtgaccggcgaggaaagcggcgcgcaggtgtcgctgcgctcc
aggcggctcggtctggaccactcgcaggtgcaggtgctggccgagatccagctggagaag
atcatcgccacgctcgacgcgacgcgcccggccatcgcggtgatcgactcgatccagacg
gtgtactccgaccagctcacctccgcgccgggctcggtggcccaggtgcgcgaatgcgcg
gcccacctcacgcgctttgccaagaccagcggcacggccgtggtgctggtgggccacgtc
accaaggagggcgcgctcgcgggcccgcgcgtgctcgagcacatggtcgacacggtgctg
tacttcgagggcgacacgcattcgagcttccgcctcgtgcgcgccatcaagaaccgcttc
ggcgccgtgaacgagatcggcgtgttcgcgatgaccgagcgcggcctgaagggcgtgacc
aatccgagcgcgatcttcctgagccagcatgcggagccggtgcccggcagcgtggtgctg
gtcacgctcgagggcacgcggccgatgctggtggagatccaggcgctggtcgacaacggc
gggccgagcccgcgccgcctctcggtgggcctggaccgcgaccggctcgcgatgctgctg
gccgtgctgcaccgccatgcgggcgtggcctgcatggaccaggacgtgttcgtgaacgcg
gtgggcggggtgcgcatcagcgagccggcggcggacctggccgtgatgctcgccatcacg
tcgagcctgcgtggcaagccgctgcccaggggattcatcgcattcggtgaagtcggcctt
gcgggcgaagtgcgccccgcgccgcgtggacaggagcgcctgcgcgaagcggccaagctg
ggcttcagcgtggccgtggtgcccaaggcgaatgcgccgcgcaagggcacgaaagagatc
gaagggttgactatccatgccgtcgaacgcatcgaagaggcgatggacgtggttcgccgc
ctcgattga
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