Variovorax paradoxus B4: VAPA_1c04100
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Entry
VAPA_1c04100 CDS
T02835
Symbol
rbsB
Name
(GenBank) putative ribose ABC transporter, ribose-binding protein RbsB
KO
K10439
ribose transport system substrate-binding protein
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd02010
ABC transporters
vpd02030
Bacterial chemotaxis
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
VAPA_1c04100 (rbsB)
09140 Cellular Processes
09142 Cell motility
02030 Bacterial chemotaxis
VAPA_1c04100 (rbsB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_1c04100 (rbsB)
Transporters [BR:
vpd02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
Ribose transporter
VAPA_1c04100 (rbsB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_4
Peripla_BP_1
SBP_bac_11
Peripla_BP_3
Adhesin_P1_N
Motif
Other DBs
NCBI-ProteinID:
AGU47540
UniProt:
T1X5V1
LinkDB
All DBs
Position
1:complement(441390..442310)
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AA seq
306 aa
AA seq
DB search
MKNLLKATALVAALACGASAAQAQTPKQPLRIGMTFQELNNPYFVTMKQALEEAAASIGA
TVVTTDARHDVAKQIGDVEDMIQKKIDILLLNPTDSTGVQSAVRSAKKAGLIVVAVDANA
QGPVDSFVGSKNIDAGRLACEYLAKSIGEKGDVAILDGIPVVPILERVKGCREALAKYPG
IKVVSTQNGKQERATALTVTENILQANGNLKGIFSVNDGGSMGALAAIEASGKDVKLASV
DGAPEAIKAMQKPGSKFIATTAQYPRDQIRLAIGIALARKWGANVPAAVPVDVKLIDAEG
AKTFSW
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaccttctcaaagccaccgccctcgtcgccgcactggcctgcggcgcatccgcc
gcacaggcgcagaccccgaagcagccgctgcgcatcggcatgaccttccaggaactcaac
aacccctacttcgtgacgatgaagcaggcgctcgaagaggccgcggccagcatcggcgcg
accgtggtcaccaccgatgcgcggcacgacgtggccaagcagatcggcgacgtggaggac
atgatccagaagaagatcgacatcctgctgctgaacccgaccgactccaccggcgtgcag
tcggccgtgcgctcggccaagaaggcggggctgatcgtggtggcggtggatgccaacgcg
cagggcccggtcgactcgttcgtcggctcgaagaacatcgacgcaggccggctcgcctgc
gaatacctcgcgaagagcatcggcgagaaaggcgacgtggccatcctcgacggcattccg
gtcgtgccgatcctggagcgcgtgaaaggctgccgcgaagcgctcgccaagtaccccggc
atcaaggtggtaagcacgcagaacggcaagcaggagcgcgccaccgcactcaccgtcacc
gagaacatcctgcaggccaacggcaacctgaaaggcatcttcagcgtgaacgatggcggc
tcgatgggcgcgctcgccgccatcgaggccagcggcaaggacgtgaagctcgccagcgtg
gacggcgcgcccgaagccatcaaggccatgcagaagccgggctcgaagttcatcgccacc
accgcgcagtacccgcgcgaccagatccgcctggccatcggcatcgcgcttgccaggaag
tggggcgccaacgtgccggccgccgtgccggtggacgtgaagctgatcgacgccgagggc
gcgaagaccttcagctggtaa
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