Variovorax paradoxus B4: VAPA_1c04560
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Entry
VAPA_1c04560 CDS
T02835
Symbol
uvrA1
Name
(GenBank) UvrABC system protein A UvrA
KO
K03701
excinuclease ABC subunit A
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VAPA_1c04560 (uvrA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c04560 (uvrA1)
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VAPA_1c04560 (uvrA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VAPA_1c04560 (uvrA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
AAA_23
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_22
nSTAND3
ATPase
AAA_21
AAA_25
Viral_helicase1
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AGU47586
UniProt:
T1X593
LinkDB
All DBs
Position
1:complement(490831..493938)
Genome browser
AA seq
1035 aa
AA seq
DB search
MSGCPRTIAPLNSKAIEDFAERARDAELERDTYLGAVLAQQRISIRGARTHNLKNVDLDI
PRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMDKPDVDVIEGLSP
AISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEHHLPLQAQTVSQMVDATLA
IPDEPRLMILAPVAREKKGEFLELFAEMQAAGYVRFRVDGQTYEYNDLPKLKKTEKHDID
VVIDRLRARPDMQQRLAESFEAALRLAEGRAIALELGTEGAPDKEHLFNAKFACPICHYS
LSELEPRLFSFNSPVGACPSCDGLGHREVFDPARVVAFPSLSLASGAIKGWDRRNGYYFS
MIESVAKHYKFDVDAPFESLPASVQQVLLQGSAAEEIKFNYTMESGNFAGKKLTKKHPFE
GIIPNMARRYRETDSVMVREDLARFRNLQPCPDCGGSRLRPEARNVFLVDESARPADGGE
PPRMAIFELSHLTLRDSLAWFQTLKLRGAKADIADKVVREIGLRLKFLNDVGLNYLSLDR
SAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVI
VVEHDEDMIHAADHVIDMGPGAGIHGGRVMAQGSYAQVAANPDSLTGQYLSGAKKIEVPK
RRTAWLPVVKKPAFNEGRKASRFPPSPAAERRAAREAAHLASQTDLQEIRVVGATGNNLQ
NVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLYRAHEEPAAHESVEGIEYFDKV
INVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTARERGYGPGRFSFNVAGGRCEACQG
DGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEVLYKGRNIAQILEMTVETAHEFLKAVPT
IERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHF
ADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWLIDMGPEGGAGGGTVVGEGTPEDIA
ANEASHTGRYLKRLL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgtccggttgccctcggacgatcgcccccttgaattccaaagccattgaagacttcgcg
gagcgcgcacgcgacgcggaactcgaacgtgacacctacctcggcgcggtgcttgcgcag
cagcgcatcagcatccgcggtgcccgcacccacaacctgaagaacgtcgacctcgacatc
ccgcgcaacaagctggtggtgatcaccggcctgtcgggctcgggcaagtcgagcctggcc
ttcgacacgctgtatgccgaaggccagcggcgctacgtggaaagcctctcggcctatgcg
cggcagttcctgcagctcatggacaagcccgatgtggacgtgatcgagggcctgtcgccc
gccatcagcatcgagcagaaggccaccagccacaacccgcgctccaccgtgggcacggtg
accgagatccacgactacctgcgcctgctctacgcccgcgccggcacgccctactgcccc
gagcaccacctgccgctgcaggcgcagaccgtgtcgcaaatggtcgatgccacgctcgcg
atccctgacgagccccgcctgatgatcctggcgccggtggcgcgcgagaagaagggcgag
ttcctcgagctcttcgccgaaatgcaggccgcgggctacgtgcgctttcgcgtcgacggg
caaacgtacgaatacaacgacctgccgaagctcaagaagaccgaaaagcacgacatcgac
gtggtgatcgaccggctgcgcgcgcgccccgacatgcagcagcgcctggccgagagcttc
gaagcggccctgcggctggccgaaggccgcgccatcgcgctggagctgggcaccgagggc
gcgcccgacaaggagcacctgttcaacgccaagttcgcctgcccgatctgccactactcg
ctgtcggagctggagccgcgcctcttctcgttcaactcgcccgtgggcgcctgtccgagc
tgcgacggcctcggccaccgcgaggtgttcgacccggcgcgcgtggtggccttcccctct
ctctcgctggccagcggcgccatcaagggctgggaccgccgcaacggctactacttcagc
atgatcgagagcgttgcgaagcactacaagttcgacgtcgacgcgcccttcgaatcattg
cccgcctcggtgcagcaggtgctgctgcaaggctcggcggccgaggagatcaagttcaac
tacaccatggaatcgggcaacttcgcgggcaagaagctcacgaagaagcatcccttcgag
gggatcatcccgaacatggcgcggcgctaccgcgagaccgactcggtgatggtgcgcgaa
gacctcgcgcgctttcgcaacctgcagccgtgtcccgactgcggcggctcgcggctgcgg
cccgaggcgcgcaacgtgttcctggtggacgaatcggctcggcccgcggatggcggcgag
ccgccgcgcatggcgatcttcgagctcagccacctaaccttgcgcgattcgctggcctgg
ttccagacgctcaagctgcgcggcgccaaggccgacatcgccgacaaggtggtgcgcgag
atcggcctgcgcctgaagttcctcaacgacgtgggcctgaactacctgagcctggaccgc
agcgccgaaacgctctcgggcggcgaggcgcagcgcatccggctcgcctcgcagatcggc
tcgggcctgacgggcgtgatgtacgtgctcgacgagcccagcatcggcctgcaccagcgc
gacaacgaccggctgatcggcacgctgaagcacctgcgcgacatcggcaacagcgtgatc
gtggtcgagcacgacgaggacatgatccacgccgccgaccacgtgatcgacatgggcccc
ggcgcgggcatccacggcgggcgcgtgatggcgcagggcagctatgcccaggtggcggcc
aaccccgattcgctgaccggccagtacctttcgggcgcgaagaagatcgaagtgccgaag
cgccgcaccgcgtggctgccggtcgtgaagaagcccgccttcaacgaaggcaggaaggcc
tcgcgctttccgccgagccccgcggccgagcggcgcgccgcacgcgaagcggcgcacctg
gcctcgcagaccgacctgcaggaaatccgcgtggtcggcgccaccggcaacaacctgcag
aacgtgagcgtggccttccccgtcggcctgctcacctgcgtgacgggcgtctcgggctcg
ggcaagtcgacgctggtgaacgacaccctctacaccgccgtggcgcgcacgctctaccgc
gcgcacgaggagccggccgcgcatgaatcggtcgagggcatcgagtatttcgacaaggtc
atcaacgtcgaccagagccccatcggccgcacgccgcgcagcaacccggccacctacacc
ggcctgttcacgccgatccgcgagctgatggccgagaccaacaccgcgcgcgaacgcggc
tacggcccgggccgcttcagcttcaacgtggcgggcgggcgctgcgaggcctgccagggc
gacggcgtggtgaaggtcgagatgcacttcctgcccgacgtgtacgtgccctgcgaggtg
tgccacggccagcgctacaaccgcgagacgctcgaggttctgtacaagggcaggaacatc
gcgcagatcctcgagatgacggtcgagaccgcgcacgagttcctgaaggccgtgccgacc
atcgagcgcaagctgcgcaccctgctcgacgtgggcctctcctacatcaagctcggccag
tcggccaccacgctgtcgggcggcgaggcgcagcgcgtgaagctggcgctggagctcagc
aagcgcgacaccggccgcacgctctacatcctcgacgagccgaccaccggcctgcacttt
gccgacatcgaactgctgctcaaggtgctgcaccagctgcgcgacgcgggcaacaccatc
gtcgtgatcgagcacaacctggacgtcatcaagacggccgactggctgatcgacatgggc
cccgagggcggcgccggcggcggcacggtggtgggcgaaggcacgccggaagacatcgcg
gcgaacgaggcgagccacacggggcgctacctcaagcggctgctgtag
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