KEGG   Variovorax paradoxus B4: VAPA_1c05940
Entry
VAPA_1c05940      CDS       T02835                                 
Symbol
icmF2
Name
(GenBank) putative type VI secretion protein IcmF
  KO
K11891  type VI secretion system protein ImpL
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    VAPA_1c05940 (icmF2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vpd02044]
    VAPA_1c05940 (icmF2)
Secretion system [BR:vpd02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   VAPA_1c05940 (icmF2)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related IcmF_C IcmF_helical DUF7269
Other DBs
NCBI-ProteinID: AGU47724
UniProt: T1X5W8
LinkDB
Position
1:648997..652596
AA seq 1199 aa
MIKKFFGFLFSPLLLTLLALVIVALLVWWIGPLVKIGAWVPLESELARALLIGAIVLIVV
LRAIYRRWRARRASQHLTDGLMKAPTVKTDAPVNGEQKILDTRFSEAVATLKQMRLHAAG
KKPGWRDWLSISGGSYLYDLPWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVGG
TRNCDWWFTDEAVLIDTAGRYTTQDSHQSEDKSAWEGFLGLLKKARPRRPLNGVFLTVSV
ADLLSQGPEQRTQLAASIRARLLELDAKLTTRLPVYVLVTKSDLLYGFTDYFDDLGKEQR
AQVFGFTLAADENVQADEKGLSTAFHREFALLHNRVNDGLIARMQRETDGTRRAAIFGFP
AQFGSIGSMLSDLLDQVFTGSRFAQPPWVRGVYFTSGTQEGSPIDRVMGSLARSFGIERA
MLAPQKSSGRSYFLTALLREVVFPEQRLAGANVKLERRRHALRMAGVAAMTLVTLALLAG
WGYSTLQNVNYLKSVEARVEPARQTLAALPSRVQNLVEVAPVLQGLRDIWKTPDNRQGDE
PLSMTLGLYQGDKLDAAAMLTHQRALNDAFLPQIAKRIEDQLRTAQKDNLEYTYEALKSY
LMLYQPEHFDAEALKAWITLDWARSLDRGIPEDQRQALEDQLDVLIAQGPPRSPLKMDEN
LVRSVRAVLASYPLEQRVFSRLKRQRATKDIPGFSIATAAGPSAPLVFERISGKPLTEGV
PGMFTYDGYHKRFQNEVTVLTGLLAQEDPWVLGQDRSATDRMRDVAALGALTDRVRRLYL
AEYVKVWEALLADVRLIRASGLEKNIEAARILSGVGSPLANFLRAVVKETTLIPADQPKD
VVSKATATVANTRKGLEDLFGGDPNKPVASGKRIESIVDDRFEPLRRLVTAAGPNQPAPI
DDALKLFNEVYVYLNAVDTAVKGRTSPPPGDVAGKLKSDAGRLPEPVRTMVENLSQSGAA
QAQVAERGNLSQDLRPVTDFCNRAIAGRYPFVGSSKRDVLPEDFGQMFGAGGLMDEFFQK
RLAALVDTSTKPWRYKPVAERGAVTTQALAQFERAARIKDIFFRGGGRGPSMRLDFKPVE
MDAGITQFILDVDGQLVKYAHGPVVPMAVQWPGPKGSNQVRIQVSPPSTTGSSGAAVDGP
WALFRALDDGQLEAGDAPEKFFITFQIGARKTRFEVTTNSVQHPIRLKELREFSCPEGL
NT seq 3600 nt   +upstreamnt  +downstreamnt
atgatcaagaaattcttcggcttcctgttcagcccgctgctgctgaccctgctggcgctg
gtcatcgtcgcgctgctggtctggtggatcggcccgctggtgaagatcggtgcgtgggtg
ccgctcgaaagcgagcttgcacgcgcgctgctgatcggcgccatcgtgctcatcgtggtg
ctgcgcgcgatctaccgcaggtggcgcgcgcgccgtgcgagccagcacctgaccgacggc
ctcatgaaggcccccaccgtcaagaccgacgccccggtcaacggcgaacagaagatcctc
gacacgcgcttcagcgaagccgtggccacgctgaagcagatgcgcctgcatgccgcgggc
aagaagcccggctggcgcgactggctttccatttccggtggcagctatctgtacgacctg
ccttggtacgtgttcatcggcgcgccgggcgcgggcaagaccacggcgctggtcaactcg
ggcctgtcgttcccgctggccgagaagttcggccccggcgcgatccgcggcgtgggcggc
acgcgcaactgcgactggtggttcaccgacgaggccgtgctcatcgacaccgccggccgc
tacaccacgcaggacagccaccagtcggaagacaagagcgcatgggagggcttcctcggc
ctgctcaagaaggcgcgcccgcgccggccgctcaacggcgtgttcctgaccgtgagcgtg
gccgacctgctgagccagggccccgagcagcgcacgcagctggccgcatccatccgcgcg
cggctgctcgagctcgatgcgaagctcaccacgcggctgccggtgtacgtgctcgtcacc
aagagcgatctgctctatggcttcaccgactacttcgacgacctcggcaaggagcagcgc
gcgcaggtcttcggcttcacgctggcggccgacgagaacgtgcaggccgacgagaagggg
ctgtccaccgccttccaccgcgagttcgcgctgctgcacaaccgcgtcaacgacggcctc
atcgcacgcatgcagcgcgagaccgacggcacgcggcgcgcggcgatcttcggttttccg
gcgcagttcggctccatcggctcgatgctgtccgacctgctcgaccaggtcttcaccggc
tcgcgcttcgcgcagccgccgtgggtgcgcggcgtgtacttcaccagcggcacgcaggaa
ggcagcccgatcgaccgcgtgatgggcagcctggcacgcagcttcggcatcgagcgcgcg
atgctcgcgccgcagaagtcgagcggccgcagctactttctcaccgcgctgctgcgcgag
gtggtgttccccgagcagcggctggccggcgcgaacgtgaagctcgaacggcggcgccac
gcgctgcgcatggcgggcgtggcggccatgacgctggtcacgctcgcgctgctcgcgggc
tggggctacagcacgctgcagaacgtcaattacctgaagtcggtcgaggcgcgcgtcgag
cccgcgcgccagacccttgcggccctgccttcgcgggtgcagaacctggtggaggtggcg
cccgtgctgcagggcctgcgcgacatctggaagacgcccgacaaccgccagggcgacgag
ccgctgtcgatgacgctcggcctctaccagggcgacaagctcgacgctgccgccatgctc
acgcaccagcgcgcgctcaacgacgccttcctgccgcagatcgccaagcgcatcgaggac
cagctgcgcaccgcgcagaaggacaacctcgagtacacctacgaggcgctcaagagctac
ctcatgctctaccagcccgagcacttcgatgccgaggcgctcaaggcctggatcacgctc
gactgggcgcgcagcctggaccgcggcattcccgaagaccagcgccaggcgctcgaagac
cagctcgacgtgctcatcgcgcaaggcccgccgcgttcgccgctcaagatggacgagaac
ctggtgcgcagcgtgcgcgccgtgctcgcgagctatccgctggagcagcgcgtgttcagc
cgcctgaagcgccagcgcgccaccaaggacattccgggcttcagcatcgccacggccgcg
ggcccttcggcgccgctggtgttcgagcgcatcagcggcaagccgctgaccgaaggtgtg
ccgggcatgttcacctacgacggctaccacaagcgcttccagaacgaggtcacggtgctc
accggcctgctcgcgcaggaagacccgtgggtgctcgggcaggaccgcagcgccaccgac
cgcatgcgcgacgtggcggcgctcggcgcgctgaccgatcgcgtgcgccggctctacctg
gcggagtacgtcaaggtctgggaggccctgctggccgacgtgcggctgatccgcgccagc
gggctcgagaagaacatcgaggccgcgcgcattctctcgggcgtgggttcgccgcttgcg
aacttcctgcgcgcggtggtgaaggaaaccacgctcattcccgccgaccagcccaaggac
gtggtgagcaaggccaccgccacggtcgccaacacccgcaagggcctggaagacctgttc
ggcggcgacccgaacaagcccgtggccagcggcaagcgcatcgagagcatcgtggacgac
cgcttcgaaccgctgcgccgcctcgtcactgctgccgggccgaaccagcccgcgccgatc
gacgatgcgctcaagcttttcaacgaggtgtacgtgtacctcaacgccgtcgacacggcc
gtgaagggccgcacctcgccgccgcccggcgacgtggccggcaagctcaagtccgacgcg
ggccgcctgcccgagccggtgcgcacgatggtcgagaacctgagccagtcgggcgcggcg
caggcccaggtggccgagcgcggcaacctgagccaggacctgcgtcccgtgaccgatttc
tgcaaccgcgccatcgcgggccgctatccgtttgtgggcagcagcaagcgcgacgtgctg
cccgaggacttcggccagatgttcggcgccggcggcctgatggacgagttcttccagaag
cggctggccgcgctggtcgacaccagcacgaagccgtggcgctacaagccggtggccgaa
cgcggcgccgtcaccacgcaggcgctggcgcagttcgagcgggccgcgcgcatcaaggac
atcttcttccgcggcggcggccgcggcccgtcgatgcggctcgacttcaagccggtggag
atggatgcgggcatcacgcaattcatcctcgacgtggacggacagctcgtgaaatacgcg
cacggcccggtggtgcccatggccgtgcagtggccggggccgaaggggagcaaccaggtg
cgcatccaggtcagcccgccttcgaccaccggcagttcgggtgccgcggtcgacgggcca
tgggcgctgttccgcgcgctcgacgacggccagctcgaagccggcgatgcgcccgagaag
ttcttcatcactttccagatcggcgcccgcaagacgcgcttcgaggtgacgacgaacagc
gtgcagcatccgatccgcctgaaggaactgcgcgagttctcctgtccggaggggttgtga

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