Variovorax paradoxus B4: VAPA_1c07300
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Entry
VAPA_1c07300 CDS
T02835
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase Ung
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VAPA_1c07300 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c07300 (ung)
Enzymes [BR:
vpd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
VAPA_1c07300 (ung)
DNA repair and recombination proteins [BR:
vpd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VAPA_1c07300 (ung)
Prokaryotic type
VAPA_1c07300 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AGU47859
UniProt:
T1X690
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All DBs
Position
1:798278..798985
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AA seq
235 aa
AA seq
DB search
MNRPDQLASSDPADWPVAPGWQPLVDDFFAGIVGQKLRSFLRERLDAGAVIFPPQPLRAL
ELTPPEDVRVVILGQDPYHGRGQAEGLAFSVAPGVALPPSLRNIFKELQRDLGAPPPPFP
NPGGSLVKWATHGVLLLNTCLTVEEGQPASHSGRGWEVLTDAVIRHVSDGEKPVVFMLWG
SHAQSKRALIDIGRHKVLMSNHPSPLSALRPPAPFIGCGHFGEARAWREARRAGE
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgaaccggcccgatcagctggcgagcagcgatcccgccgactggcccgttgcgccaggc
tggcagccgctggtggacgacttctttgccggcatcgtggggcagaagctgcgcagcttc
ctgcgcgagcgccttgatgcgggcgcagtcatcttcccgccgcagccgctgcgggcactg
gaactgacgccgcccgaagacgtgcgcgtcgtcatcctggggcaggacccgtaccacggg
cgtggccaggccgaggggctcgcgttctcggtggcgcccggcgtggcgctgccgccgtcg
ctgcgcaacatcttcaaggaactccagcgcgaccttggcgcgccgccgccgccgttcccg
aatccgggcggcagcctggtgaagtgggcgacccacggcgtgctgctgctcaacacctgc
ctcacggtcgaggaggggcagccggccagccattcgggccgcggctgggaggtgctgacc
gatgcggtcatccgccatgtatcggacggcgagaaacctgttgtttttatgctctggggc
tcgcatgcccaaagtaagcgtgcgttgatcgatattgggcgccataaggtgctgatgtcc
aatcatccgtcgccgctttctgcgttgcgtccgcccgcgcccttcatcggctgcggacat
tttggcgaagcgcgtgcgtggcgggaggcgcgccgggcgggcgagtga
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