| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase, subunit beta' RpoC
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| KO |
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| Organism |
vpd Variovorax paradoxus B4
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:vpd00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VAPA_1c07430 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:vpd03021]
VAPA_1c07430 (rpoC)
03400 DNA repair and recombination proteins [BR:vpd03400]
VAPA_1c07430 (rpoC)
Enzymes [BR:vpd01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VAPA_1c07430 (rpoC)
Transcription machinery [BR:vpd03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VAPA_1c07430 (rpoC)
DNA repair and recombination proteins [BR:vpd03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VAPA_1c07430 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1:808800..813029
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| AA seq |
1409 aa
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFVAKM
GAEGIKDLLEGIELDSEIERLRGDLTGSEVKVKKNSKRLKVLEAFRKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDANEV
ELTAKVAVRITEYTKDKETGVFTPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIERSAKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQKVIDRHGKEVEQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRILG
RSAADDVLHPENRSVLLKAGEMFDEDNIEELEAQGVDEVKVRTALTCETRFGICATCYGR
DLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGVIGFN
ATMRYVTNSKNELVVIARSGEIVIHDEHGRERERHKVPYGAILAVKADQQIKAGHVLANW
DPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DASGAEVKIPGTDHSVTIGFPIGALVQIRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGGVYEDLVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVDNIGETSYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKAKDQMDEAERRA
IAESEAAELAGSTSDVSTTADASEGAATE |
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| NT seq |
4230 nt +upstreamnt +downstreamnt
atgaaatcgctactcgacctgttcaagcaattcacgcccgatgagcatttcgatgccatc
aagatcggcatggcttcgcccgagaagatccgttcgtggtctttcggcgaggtgaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgcgacggcctcttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgtctgaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggtcacatcgacctggctgcgccctgcgcccacatctggttcctgaagtcgctg
ccgtcgcgcctgggtctcgtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctacgtgatcaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgactatgacgcgaagcgcaaggaatacggcgacgagttcgtcgccaagatg
ggcgccgaaggcatcaaggacctgctcgaaggcatcgaactcgacagcgagatcgaacgc
ctgcgcggcgacctgaccggctccgaagtcaaggtcaagaagaactccaagcgcctgaag
gtgctggaagccttccgcaagtcgggcatcaagcccgagtggatggtgctcgacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgtctgcgccgcctg
ctggagctcaaggctccggaaatcatcgcgcgcaacgaaaagcggatgctgcaagaggct
gtcgactcgctgctggacaacggccgccgcggcaaggccatgacgggcgccaacaagcgc
gcgctcaagtcgctcgccgacatgatcaagggcaagagcggccgcttccgccagaatctg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgacgctcaag
ctgcaccagtgcggcctgccgaagctgatggcgctcgaactgttcaagccgttcatcttc
tcgcgcctggaagccatgggcatcgcgacgacgatcaaggctgccaagaaggaagtcgaa
tcgggcacgccggtggtctgggacatcctggaagaagtgatcaaggaacacccggtcatg
ctgaaccgtgcgcctacgctgcaccgtttgggcatccaggcgttcgagccgatcctgatc
gaaggcaaggcgatccagctgcacccgctggtttgcgcggccttcaacgccgacttcgac
ggcgaccagatggccgtccacgtgccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggcttcgggcgaaccgtcgatcgttcct
tcgcaggacgtggtgctgggtctgtactacacgacccgcgaccgcatcaatggcaagggc
gagggcctgatcttctccgacatcggtgaagtgcagcgcgcgctcgacgccaacgaagtc
gagctgaccgccaaggttgccgtgcgcatcacggagtacaccaaggacaaggaaaccggc
gtgttcacgccgtcgacctcgctggtggacaccaccgtgggccgtgcactgctgtccgag
atcctgcccaagggcctgccgttctcgaacatcaacaaggcgctgaagaagaaggaaatc
tccaagctcatcaacgtctcgttccgcaagtgcggcctgaaagagaccgtggtgtttgcc
gacaagctgctgcagaacggcttccgcctggcaaccaaggccggtatctcgatcgccatc
gacgacatgctggtgcccgctgaaaagcacggcatcatcgagcgctcggccaaggaagtg
aaggagatcgagcagcagtacgtctccggtctcgtgacctccggcgaacgctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtgtcgaaggtcatgatggccaagctg
tcgaagcagaaggtcatcgaccgccacggcaaggaagtggagcaggagtcgttcaactcc
atctacatgatggccgactccggcgcccgtggttccgccgcgcagattcgccaggtggcg
ggcatgcggggcctgatggccaagccggacggctcgatcatcgagacgcccatcaccgcg
aacttccgcgaaggcctgaacgtgctggagtacttcatctccacccacggtgcccggaag
ggtctggccgacacggcgctgaagacggcgaactcgggctacctgacccgccgtctggtc
gacgtgacgcaagacctggtcgtgaccgagcaggattgcggcacgcacggcggctacctg
atgcgcgccatcgtcgaaggcggtgaagtcatcgaatcgctgcgcgaccgtatcctcggc
cgctcggctgccgacgacgtgctgcatccggaaaaccgctcggtgctgctgaaggccggc
gagatgttcgacgaggacaacatcgaagagctcgaggcgcaaggcgtcgacgaggtcaag
gtgcgtaccgcgctgacctgcgaaacccgcttcggcatctgcgcgacctgctacggccgc
gacctgggccgcggcggcctgatcaacatcggcgaagccgtcggtgtgatcgctgcgcag
tccatcggcgaacccggcacgcagctcacgatgcgtacgttccacatcggtggtgcggcc
tcgcgtgcagcggtggcctcgagcgtcgaagccaagtccaacggcgtgatcggcttcaac
gccacgatgcgctacgtgaccaacagcaagaacgagctggtggtgatcgcgcgttcgggc
gagatcgtcatccatgacgaacacggccgcgagcgcgaacgccacaaggtgccgtacggt
gcgatcctggcggtcaaggccgaccagcagatcaaggccggccacgtgctcgccaactgg
gatccgctgacgcgcccgatcatcacggaattcgccggcaagacgcagttcgagaacgtg
gaagaaggcctcacggttgccaagcaggtggacgaagtgaccggcctgtcgaccctggtg
gtgatcgatccgaagcgccgcggcgccgcgaaggtcgtgcgcccgcaggtgaagctcatc
gacgcctccggcgccgaagtgaagatcccgggcaccgaccactcggtgacgatcggcttc
ccgatcggcgccctggtgcagatccgcgacggccaggacgtgggccccggcgaagtgctg
gcgcgtattccggtcgaaggccagaagacccgcgacatcaccggcggtctgccgcgcgtt
gccgagctgttcgaggcccgttcgccgaaggacaagggcatgctggccgaaatgaccggt
accgtgtcgttcggcaaggagaccaagggcaagatccgcctgcagatcaccgatccggaa
ggcggcgtctacgaagacctcgtgccgaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggcgagagcgtggtcgacggtccggcggacccgcaggacatcctgcgc
ctgctgggttcggaggaactcgcgcgctacatcgtggacgaagtgcaggacgtgtaccgc
ctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgacaacatcggcgagaccagctacatctccggcgaacaggtcgaacgc
agcgaaatgctcaacaccaacgacgccctgcgcgccgaaggcaagatccccgcgacgttc
accaacctgctgctgggtatcacgaaggcatcgctgtcgaccgattcgttcatctctgcc
gcgtcgttccaggaaacgacgcgcgtgctgaccgaagccgcgatcatgggcaagcgcgac
gagctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgattcccgcaggcaccggc
atggcctaccaccaggcgcgcaaggccaaggatcagatggacgaggccgagcgccgcgcc
atcgccgaatccgaagccgccgaactggctggttcgaccagcgatgtttccaccacggcc
gacgccagcgaaggcgccgcgaccgaataa |
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