Variovorax paradoxus B4: VAPA_1c08270
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Entry
VAPA_1c08270 CDS
T02835
Symbol
rfbD2
Name
(GenBank) putative O-antigen export system, permease protein RfbD
KO
K09690
homopolymeric O-antigen transport system permease protein
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
VAPA_1c08270 (rfbD2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpd02000
]
VAPA_1c08270 (rfbD2)
Transporters [BR:
vpd02000
]
ABC transporters, prokaryotic type
ABC-2 type and other transporters
Homopolymeric O-antigen
VAPA_1c08270 (rfbD2)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
ABC2_membrane
ABC2_membrane_3
Motif
Other DBs
NCBI-ProteinID:
AGU47947
UniProt:
T1X4V3
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All DBs
Position
1:complement(911209..912015)
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AA seq
268 aa
AA seq
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MTQEIHSNLHRSALSDWWEGTRRTDIWWTLAWFDIVLRYRRSMLGPLWLTLSMGAMIGGM
GPLYSSLFGTELSKFFPHLALGIIFWGFFSSVVSEACNAFVGSSNYLKQGYFPISLFVWR
SIARNLIQFAHQIVLYIPVALWAGISLSWSALLVLPALAILVINAHALGLLLGLICTRYR
DVTQIVTSVMQMLMFLTPVFWLPESLPGRAQYILWNPFAQMLDLLRTPLMGGVAEMHSWL
GILAWTVVSVVASTLLFIKYRRRVVYWL
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaaattcactccaacctccaccgcagcgccttgtccgactggtgggaaggc
acccgccggaccgacatatggtggaccctggcctggttcgacatcgtgctgcgctatcgg
cgctcgatgctggggccgctctggctcacgctgagcatgggcgcgatgatcggcggcatg
ggcccgctctacagctcgctcttcggcacggaactgtccaagttctttccgcacctcgca
ctcgggatcatcttctggggcttcttctccagcgtggtatccgaggcgtgcaacgcgttt
gtgggctcgtccaattacctgaagcagggctacttcccaatcagcctgttcgtctggcgc
agcatcgcgcgcaacctgattcagttcgcgcaccagatcgtgctgtatatcccggtggcg
ctctgggccggcatttcactgtcgtggtcggcactgctcgtactgccggccctcgcgatc
ctggtcatcaacgcgcatgctctcggcctgctgctcggcctgatctgcacgcgctaccgg
gacgtgacccagatcgtgaccagcgtgatgcagatgttgatgttcctgacgcccgttttc
tggcttcccgagagccttccggggcgtgctcagtacatcctgtggaatccctttgcacag
atgctcgacctgctgcgcactccgctgatgggcggcgtggcggaaatgcatagctggctg
ggcatcctggcctggacggtcgtgagcgttgtcgcctccacgctgctcttcatcaaatac
cgccggcgcgtcgtttactggctctga
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