Variovorax paradoxus B4: VAPA_1c09700
Help
Entry
VAPA_1c09700 CDS
T02835
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00470
D-Amino acid metabolism
vpd00550
Peptidoglycan biosynthesis
vpd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
VAPA_1c09700 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
VAPA_1c09700 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vpd01011
]
VAPA_1c09700 (murD)
Enzymes [BR:
vpd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
VAPA_1c09700 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
vpd01011
]
Precursor biosynthesis
Amino acid ligase
VAPA_1c09700 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
Sacchrp_dh_NADP
AlaDh_PNT_C
Motif
Other DBs
NCBI-ProteinID:
AGU48090
UniProt:
T1X7I8
LinkDB
All DBs
Position
1:1070217..1072304
Genome browser
AA seq
695 aa
AA seq
DB search
MRHLKDLPVLILGLGASGLAMVRWCARHGAVVTVADTRDAPALLATLRAELPDVAFVGGP
FSAALVEGTPIRAVYRSPGLSPATIAPVVDAARAVGLAVGGELDLFARALLDLRTVEVPV
VEAEPEVQAEPSVETPAESVVEPEAQGELPLGGEPAEAADGTTVEAVEVPETPETPEMAE
PVAEPAPSAQTEAMPRDPSLSVPAAPPEEEQQPSQEEAPAAETQDVPSPTPVPASATVSR
LPPPGQPYVPTAAREAAEFVAKIAELSATNPASAAVEEEETPQLKLVPIEEPPAPKGYTP
AVLAITGTNGKTTVTALTGQLVERAGKSVAVAGNIGPTLLDTLAAHIDAETLPDVWVLEL
SSFQLDGVQGFEPTAATVLNLTQDHLDWHGDMPNYASAKARIFGTQGLMVLNRDDPGVMA
MLPPPVKVKLQRPQIRAHVTFGAAMPLRPGDYGIERVNGMAWLVRALEADETQKRKRGAV
VEEEIFLQRLLPADVLRIRGRHNAMNALAALALASAAGCPLGPMLYGLREYRGEPHRVEP
IALIDEVEYFDDSKGTNVGATVAALNGLGEDRRVVVILGGEGKGQDFEPLAAPVAQYARA
VVLIGRDAPLIEQALAATGASLMHAGSMEEAVKLAAARANPGDAVLLSPACASFDMFKDY
EHRAAVFRDAVQALADDPSEAASSNDSDFSSGDPV
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgcggcatctgaaagacctccccgtcctgatcctcggcctcggtgcgtccgggctggcg
atggtgcgctggtgcgcgcgccacggtgcggtcgtcacggtggccgatacgcgcgatgca
cccgccctgcttgcaacgctgcgggcggagctgcccgatgtggcgttcgtcggcgggccg
ttctcggccgcgctggtcgaaggcacgccgatccgcgccgtgtaccgctcgccgggcctg
tcgcccgccaccatcgcaccggtcgtcgatgcggcgcgggccgtggggctcgcggtcggc
ggcgagctggatctgtttgcgcgcgcgctgctggacctgcggaccgtcgaagtgccggtg
gtggaagcagagcctgaagtgcaggccgagccttcggtggagacgccggcggaatccgtg
gtcgaacctgaagcgcaaggcgaattgccgttgggcggcgaaccggcggaagctgcggac
gggacgacggtcgaggcggtcgaagtgccggaaacgcccgagaccccggaaatggccgaa
cccgtcgccgaacccgcgccctccgcgcagaccgaagccatgccgcgcgacccgtcgctg
agcgttcccgccgcgccgcccgaagaagaacaacaaccatcgcaggaagaggcgcccgcg
gccgagacgcaggatgtcccctcgccgacgccagtgccggcctccgccaccgtgtcgcgt
ctgccgccccccggccagccctacgtccccacggccgccagggaggccgccgagttcgtc
gccaagatcgccgaactctccgccaccaacccggcctccgccgcggtcgaggaagaggaa
acgccgcagctcaagctcgtgccgatcgaggagccgccagcgcccaagggctacacaccc
gcggtgctcgccatcaccggcaccaacggcaagaccaccgtcaccgcgctcaccggccag
ctggtcgagcgcgcaggaaagagcgtggccgtggcgggcaacatcggcccgacgctgctc
gacaccctggctgcgcacatcgatgccgagacgctgcccgatgtctgggtgctcgaactc
tcgagcttccagctcgacggcgtgcagggcttcgagccgaccgccgccaccgtactcaac
ctcacgcaggaccatctcgactggcatggcgacatgccgaattacgcatcggccaaggcg
cgcatcttcggcacgcaggggctcatggtgctcaaccgcgacgaccccggcgtgatggcc
atgctgcccccgcccgtcaaggtgaaactgcagcgtccacagatccgcgcccacgtcacc
tttggcgccgcgatgccgctgcgtcccggggactacggcatcgagcgcgtcaacggcatg
gcctggctggtgcgcgcgctcgaagccgacgagacgcagaagcgcaagcgcggcgcggtg
gtcgaggaagaaatcttcctgcagcgcctgctgccggccgacgtgctgcgcatccgcggc
cgccacaacgccatgaacgcgctggcggcgctcgcgctggccagtgccgccggttgcccg
ctcggtcccatgctctacggcctgcgcgaatatcgcggcgagccgcaccgcgtggagccg
atcgcgctgatcgacgaggtcgagtacttcgacgacagcaagggcaccaacgtcggcgcg
acggtcgccgccctcaacggcctcggcgaagaccgccgcgtggtcgtcatcctcggtggc
gagggcaagggccaggacttcgaaccgctcgccgcgcccgtggcgcagtacgcgcgcgcc
gtggtgctcatcggccgcgatgcgccgctgatcgaacaggcgctggccgccaccggcgct
tcgctgatgcatgcgggctcgatggaggaggccgtcaagctggccgccgcgcgcgccaat
cccggcgatgccgtgctgctgtcgccggcctgtgcgagcttcgacatgttcaaggactac
gagcaccgcgcggccgtgttccgcgacgccgtgcaggcgcttgcggacgacccgagcgag
gcggcctcgtcgaacgattccgatttttcttcgggagacccggtgtga
DBGET
integrated database retrieval system
