Variovorax paradoxus B4: VAPA_1c09740
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Entry
VAPA_1c09740 CDS
T02835
Symbol
ddl
Name
(GenBank) D-alanine--D-alanine ligase Ddl
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00470
D-Amino acid metabolism
vpd00550
Peptidoglycan biosynthesis
vpd01100
Metabolic pathways
vpd01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
VAPA_1c09740 (ddl)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
VAPA_1c09740 (ddl)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
VAPA_1c09740 (ddl)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vpd01011
]
VAPA_1c09740 (ddl)
Enzymes [BR:
vpd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
VAPA_1c09740 (ddl)
Peptidoglycan biosynthesis and degradation proteins [BR:
vpd01011
]
Precursor biosynthesis
Amino acid ligase
VAPA_1c09740 (ddl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_3
ATP-grasp_4
ATP-grasp
GARS_A
CPSase_L_D2
TTL
Motif
Other DBs
NCBI-ProteinID:
AGU48094
UniProt:
T1X717
LinkDB
All DBs
Position
1:1076108..1077079
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AA seq
323 aa
AA seq
DB search
MSLQDPKQFGKVAVLFGGSSAEREISLLSGNGVLEALRSRGVDAHAFDPAERDLVELRRE
GFARCFIALHGRHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPK
YVRLAFDQQSREQIRAVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVALSAKYDAD
VLCEEFIEGEEVTCAVLGSGLDAHALPVVRIAAPEGAYDYQNKYFTDDVKYHCPSGLPEA
EEHEIQRITLAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARAAG
IAYEDLCLRVLASASLDAAGGAQ
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
gtgagccttcaggatccaaagcaattcggcaaggttgccgtgctgttcggcggaagctcc
gccgagcgcgaaatctcgctgctgtccggcaacggcgtgctcgaggcgctgcgctcgcgc
ggcgtcgatgcgcatgccttcgatcccgccgagcgcgacctggtcgagttgcggcgcgag
gggttcgcgcgctgcttcatcgcgctgcacggccggcatggcgaggacggcacggtgcag
ggcgcgctcgaactgctcggcattccctacaccggctcgggcgtgatggcttcgagcgtg
gccatggacaaggtcatgaccaagcgcatctggcaggccgatggactgccgacgcccaag
tacgtgcgcctggctttcgaccagcaaagccgcgagcagatccgcgccgtgcccgacgtg
ctcggcttgccgctgatcgtgaagccgccgcgcgagggctcgtcgatcggcgtgaccaag
gtcgagggctattcgcagatgcaggacgcggtggcgctttcggcgaagtacgacgccgac
gtgctgtgcgaggaattcatcgaaggcgaggaagtgacctgcgccgtgctcggcagcggc
ctcgacgcgcatgcgctgccggtggtgcgcattgccgcacccgaaggcgcctacgactac
cagaacaagtacttcaccgacgacgtgaagtaccactgcccgagcggcctgcccgaagcc
gaggagcacgagatccagcgcatcacgctggccgcgtaccacacgctcggctgccgcggc
tggggccgcgccgacgtgatgatccgcgcgagcgaccgcaagcctttcctgctcgagatg
aacacttcgcccggcatgaccagccattcgctggtgcccatgtcggcgcgcgcggcgggc
attgcctacgaagacctgtgcctgcgcgtgctggcctcggcttcgctggatgccgcgggg
ggagcgcaatag
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