Variovorax paradoxus B4: VAPA_1c10100
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Entry
VAPA_1c10100 CDS
T02835
Name
(GenBank) two component sigma-54 specific transcriptional regulator, Fis family
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VAPA_1c10100
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
vpd02022
]
VAPA_1c10100
02035 Bacterial motility proteins [BR:
vpd02035
]
VAPA_1c10100
Two-component system [BR:
vpd02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
VAPA_1c10100
Bacterial motility proteins [BR:
vpd02035
]
Pilus system
Twitching motility proteins
VAPA_1c10100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA
HTH_23
HTH_28
AAA_16
HTH_30
HTH_50
PDE8A_N
Motif
Other DBs
NCBI-ProteinID:
AGU48129
UniProt:
T1X748
LinkDB
All DBs
Position
1:complement(1114316..1115869)
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AA seq
517 aa
AA seq
DB search
MQRPANILVIDDEPDLRTLYELTLLREGYRVEAAGSVSEAWQHLEAGQFDAVITDMRLPD
GQGMEIIHRIQKNQRSERCVVMTAYGSAENAVEALKAGAFDYLTKPVDLKQFRAVVASAV
QAQQALPAKAWQAAPAGQPRADTAAVPGSGVAALDRLVGDSEPMRLVKSRIAKVARGMAP
VLVRGESGTGKELVARAVHACSQRSEGPFVAVNCGAIPENLLEAEFFGARKGSYTGSSQD
RDGYFQAARSGTLFLDEIGDLPLAMQSKLLRAIQERSVRSIGSTQEDAVDVRIVSATHKD
LHAEVLAGRFRQDLFYRLNVIEIAVPALRERREDLPALCAALLARIAQDGGLPVPHLSAE
LLRRLAQHRLDGNVRELENLLHRAVALNDGDELHLDLMAPGPGTATAPAETAIAASAPSA
SALGSEAPPAPAPIAAIAAAVAEPKSPAPALPSDLQAYLDQQEREILVRALHESGFNRTA
AAARLGMSLRQIRYRIARLGITTPGGDEGASTSHADD
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtccggccaacatcctggtcatcgacgacgaacccgacctgcgcacgctgtac
gaactgaccctgctgcgcgaaggctatcgcgtcgaggctgccggtagcgtttcggaagcc
tggcagcacctggaggccgggcaattcgatgcggtgatcaccgacatgcggctgcccgat
ggacagggcatggaaatcatccaccgcatccagaagaaccagcgcagcgagcgctgcgtg
gtgatgacggcctacggctccgccgagaacgcggtcgaggcgctgaaggccggcgcattc
gactacctgaccaagccggtcgacctgaagcagttccgcgccgtggtcgcttccgcggtg
caggcgcagcaggcactgccggccaaggcctggcaggcggcgcccgcgggccagccgcgc
gccgacaccgccgccgttccaggcagcggcgtcgctgcgctcgaccggctggtgggcgac
tcggaaccgatgcgcctggtcaagtcgcgcattgccaaggtcgcgcgcggcatggcgccg
gtgctggtgcgcggcgaatcgggcaccggcaaggaactggtggcgcgcgccgtgcacgcc
tgcagccagcgcagcgaaggtccgttcgtcgcggtcaactgcggcgccattcccgagaac
ctgctcgaagccgagttcttcggcgcccgcaagggctcctacaccggctcgtcgcaagac
cgcgacggctacttccaggccgcgcgcagcggcacgctttttctcgacgaaatcggcgac
ctgccgctggcgatgcagtccaagctgctgcgcgcgatccaggagcgcagcgtgcgctcc
atcggctcgacgcaggaagacgcggtcgacgtgcgcatcgtgagcgccacgcacaaggat
cttcacgcagaagtcctggccggccgcttccggcaggacctgttctaccggctcaacgtg
atcgagattgcggtgcctgcgctgcgcgagcggcgcgaagacctgcccgccctttgcgcc
gcgctgctcgcgcgcattgcgcaggacggcgggctgccggtgccgcatctttccgccgaa
ctgctgcgccgccttgcccagcaccggctcgacggcaacgtgcgggaactcgaaaacctg
ctgcaccgcgcagtggcgctcaacgacggggacgaactgcatctggacctgatggcgcca
gggccgggcactgccacggcgccggccgagacggccattgccgcatccgcgccttctgct
tcggcgctcggcagcgaggcgcctccggcgcccgctccgatcgccgcgatcgccgcggcc
gttgcggaacccaagtccccggcgcccgcccttccctccgacctgcaggcctacctcgat
cagcaggagcgcgagatcctcgtgcgcgcgctgcatgaaagcggcttcaatcgaacggcc
gccgccgcacggctcggcatgagcctgcgccagatccgctaccgcatcgcgcggctgggc
atcaccacgcccggcggcgacgaaggtgccagcaccagccatgccgacgactga
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