Variovorax paradoxus B4: VAPA_1c10460
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Entry
VAPA_1c10460 CDS
T02835
Name
(GenBank) putative lytic murien transglycosylase
KO
K08309
peptidoglycan lytic transglycosylase [EC:
4.2.2.29
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vpd01011
]
VAPA_1c10460
Enzymes [BR:
vpd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
VAPA_1c10460
Peptidoglycan biosynthesis and degradation proteins [BR:
vpd01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
VAPA_1c10460
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SLT
Motif
Other DBs
NCBI-ProteinID:
AGU48165
UniProt:
T1X7P6
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All DBs
Position
1:complement(1153020..1155050)
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AA seq
676 aa
AA seq
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MQFPSILAPMRHRPRNAASALVFSAVLAAAALLSQQPAAAQANSNDDVLVQMKQAFQRGD
KGRLAALLPQARGHALEPWAAYWELKARLQEAAPNEVQDFFARYPGTYQEDRLRNDWLLL
LGQRRDWDGFSSALDGFRMGDDPQVRCYAILVEALRSGSATQAQAHEVRRNWFAQKDSDD
GCLTAADRLVAARLMSPNDAWKKARLAMEANRPQAARGAVTIAAPDALPLFEELNASAAK
FLAGRAFVAAKSRKELVVLALVKIAMADPEQAATQLDSKWGPMLSAEERNWLWGTIGRQA
ASKLSPLAGSYFANVTKNGDLSDDMLGWRVRAALRTGQWKEVAPAINAMSETAQLEPTWV
YWKARALGVAGGDDRRAQARELYQSIAGTRGFYEMLALEELGQRTVVPTRPAPLTPEEKN
AARSNIALNRALYAIAIGLRSEGTREWNYATNLHDKGGMDDRALLAAADFACQREVWDRC
INTSERTKGTIDVEQRFPMPFHDTVLRKSQDIGLDPAYVYGLIRQESRFIMDARSGVGAS
GLMQVMPATARWTARKIGLAGFTPGQINDHETNITIGTNYLKLALDDFDGSMALAAAAYN
AGPGRPRSWRNGPVMEAAIWAENVPFNETRDYVKKVLANTTNYAALISGRPQSLKERLGR
VGPRDAAEPEPNKDLP
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgcagttcccaagcattttggcacccatgcgccatcgcccgcgcaatgcagcgtccgcg
ctggttttttccgccgttctggccgccgccgcactgctttcgcagcagcccgccgccgca
caggccaacagcaacgacgacgtgctggtgcagatgaagcaggcgttccagcgcggcgac
aagggccggctcgcggccctgctgccgcaggcgcgcggccacgcgctcgaaccctgggcc
gcctactgggaactcaaggcccgcctgcaggaagccgcgccgaacgaggtgcaggacttc
ttcgcccgctatcccggcacctaccaggaagaccggctgcgcaacgactggctgctgctg
ctgggccagcgccgcgactgggacggcttttcctccgcgctggacggcttccgcatgggc
gacgatccgcaggtgcgctgctacgcgatcctggtcgaggccctgcgctccggcagcgcc
acgcaggcccaggcccacgaggtgcgccgcaactggttcgcccagaaagattcggacgac
ggctgcctcaccgcggccgaccgcctggtcgcggcccgcctgatgtcgcccaacgacgcc
tggaagaaggcgcgcctggccatggaggccaaccgcccgcaggctgcgcgcggcgccgtg
accattgccgcgcccgatgcgctgccgctgttcgaagagctcaacgccagcgcggccaag
ttcctggccggccgcgccttcgtggccgccaagtcgcgcaaggagctggtggtgctggcg
ctcgtcaagatcgccatggccgaccccgagcaggccgccacccagctcgacagcaaatgg
ggcccgatgctttccgccgaggagcgcaactggctctggggcaccatcggccggcaggcc
gccagcaagctctcgccgctggccggcagctacttcgccaacgtcacgaagaacggcgac
ctgtccgacgacatgctcggatggcgcgtgcgcgccgcgctgcgcaccggccagtggaag
gaggtggcgcccgccatcaacgccatgagcgaaaccgcccagctggaaccgacctgggtc
tactggaaagcgcgcgcactcggcgtcgcgggcggcgacgatcgccgcgcgcaggcgcgc
gagctctaccagagcattgcgggcacgcgcggcttctacgagatgctggcgctggaggaa
ctcggccagcgcaccgtggtgcccacgcgccccgcgccgctcacgccggaggaaaagaac
gccgcgcgcagcaacatcgcgctcaaccgcgcgctctacgccatcgccatcggcctgcgc
tccgagggcacgcgcgaatggaactacgccaccaacctgcacgacaagggcggcatggac
gaccgtgcgctgctggctgcggccgacttcgcctgccaacgcgaggtgtgggaccgctgc
atcaacaccagcgaacgcaccaagggcacgatcgacgtcgagcagcgctttcccatgccc
ttccacgacacggtgctgcgcaagagccaggacatcgggctcgacccggcctacgtctac
gggctgatccgccaggaaagccgcttcatcatggacgcgcgttcgggcgtcggcgcctcg
ggcctgatgcaggtcatgcccgccactgcgcgctggaccgcgcgcaagatcggcctggcc
ggcttcacgcccgggcagatcaacgaccacgagaccaacatcaccatcggcaccaactac
ctgaagctcgcactcgacgacttcgacggctccatggcgctggccgcggccgcctacaac
gccggccccggccggccgcgcagctggcgcaacggcccggtgatggaagcggcgatctgg
gccgagaacgtgcccttcaacgaaacacgcgactacgtgaagaaggtgctcgccaacacc
accaactacgccgcgctgatcagcgggcgcccgcagtcgctgaaggagcgcctgggccgc
gtgggcccgcgagacgcggcagagcccgagcccaacaaggacctcccctga
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