Variovorax paradoxus B4: VAPA_1c12680
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Entry
VAPA_1c12680 CDS
T02835
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03410
Base excision repair
vpd03430
Mismatch repair
vpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VAPA_1c12680
03430 Mismatch repair
VAPA_1c12680
03440 Homologous recombination
VAPA_1c12680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c12680
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VAPA_1c12680
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VAPA_1c12680
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VAPA_1c12680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AGU48383
UniProt:
T1X733
LinkDB
All DBs
Position
1:complement(1388499..1390220)
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AA seq
573 aa
AA seq
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MKIYAREIPPRSVWALEQAGVHPLLARLFAARGVLAKDELDDGLARLLPPDTLHGTREAA
VLLADAMALDKRLCIVADYDCDGATACAVAVRGLRLLGARNVSYLVPDRVVDGYGLTPPI
AERVADSGADMLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPAADVLVNPNQPG
CGFESKSIAGVGVMFYVLLALRSELRARGVFTAATQPKLDVLLPLVALGTVADVVKLDAN
NRRLVAQGLRRIRAGALPAGIAALFKAAGRNAAVATTFDFGFALGPRINAAGRLADMTLG
IECLLTDDAGRADELARMLDGINRERRDIEGGMRDQALLLAESLFGATADGSEAPPAAIS
VFDADFHEGVVGIVASRIKDRFHRPTFVFAASGAPGKEHELKGSGRSIPGFHLRDALDLV
AKRHPGVLLRFGGHAMAAGCTVAREKFDVFEQALAEVAHEWLDAATLTRRLDTDGPLARE
YMRIDLVDTLHREVWGQGFAPPTFSEEVEVVSQRLVGEKHLALKLRHQGQPVDGIWFGHT
EPLPARVKLAFRLDADEWQGVRRVRFLVEGAEI
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaagatctacgcaagggaaattccgccccgctcggtctgggcgctcgagcaggccggc
gtgcatccgctgctggcccgcctcttcgccgcacgcggcgtgctggccaaggacgagctc
gacgacggcctggcgcgcctgctgccgcccgacaccctgcacggcacgcgcgaggccgcg
gtgctgctggccgatgcgatggcgctcgacaagcgcctgtgcatcgtggccgactacgac
tgcgacggcgccaccgcctgtgccgtcgcggtgcggggcctgcgcctgctcggcgcaagg
aacgtgagctacctggtgcccgaccgcgtggtcgacggctacggcctcacgccgccgatt
gccgagcgcgtggccgacagcggcgccgacatgctgatcaccgtcgacaacggcatcgcc
agcgtcgagggcgtggccgcggccaaggcgcgcggcctgcaggtgctggtcaccgaccac
cacctgcccggccccgagctgccggccgccgacgtgctggtgaaccccaaccagcccggc
tgcggcttcgagagcaagagcatcgccggcgtcggcgtgatgttctacgtgctgctggcg
ctgcgctccgagctgcgcgcgcgcggcgtcttcaccgcggccacgcaacccaagctcgac
gtgctgctcccgctggtcgcgctcggcaccgtggccgacgtggtgaagctcgacgccaac
aaccgccgcctggtggcgcagggcctgcggcgcatccgcgccggcgcgctgccggccggc
attgcggcgctgttcaaggccgcgggacgcaacgccgcggtggccaccaccttcgacttc
ggcttcgcgctcggcccgcgcatcaacgcggccggacggctcgccgacatgacgctgggc
atcgaatgcctgctgaccgacgacgcgggccgcgccgacgaactcgcgcgcatgctcgac
ggcatcaaccgcgagcggcgcgacatcgagggcggcatgcgcgaccaggcgctgctgctg
gccgaatcgctgttcggcgccacggccgacggcagcgaggcgcctccggccgccatcagc
gtgttcgatgccgactttcacgaaggcgtggtcggcatcgtcgcctcgcgcatcaaggac
cgcttccaccgcccgaccttcgtctttgccgccagcggcgcgcccggcaaggaacacgag
ctcaagggctcgggccggtcgattccgggctttcacctgcgcgatgcgctcgacctggtg
gccaagcgccatccgggcgtgctgctgcgcttcggcggccatgcgatggccgccggctgc
accgtggcgcgcgagaagttcgacgtgttcgaacaggcgctggccgaggtggcgcacgag
tggctcgacgccgccacgctgacccgccgcctcgacaccgacgggccgctggcgcgcgaa
tacatgcgcatcgacctggtcgacacgctgcaccgcgaagtgtggggccagggctttgcc
ccgcccaccttcagcgaggaagtggaagtggtgtcgcagcgcctggtgggcgagaagcac
ctggcgctcaagctgcggcaccaggggcagccggtcgacggcatctggttcggccatacc
gagccgctgcccgcacgcgtgaagctcgccttcaggctcgatgccgacgaatggcagggt
gtgcgccgggtgcgcttcctggtcgagggagctgaaatctag
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