Variovorax paradoxus B4: VAPA_1c13920
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Entry
VAPA_1c13920 CDS
T02835
Name
(GenBank) putative DNA topoisomerase 1B
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpd03032
]
VAPA_1c13920
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c13920
Enzymes [BR:
vpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VAPA_1c13920
DNA replication proteins [BR:
vpd03032
]
Prokaryotic type
DNA Topoisomerases
VAPA_1c13920
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VAPA_1c13920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
PC_rep
Motif
Other DBs
NCBI-ProteinID:
AGU48505
UniProt:
T1X8L7
LinkDB
All DBs
Position
1:complement(1514648..1515898)
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AA seq
416 aa
AA seq
DB search
MPARSRSSSSTPPPSKPAPTAAPIADGLVYVNPDMPGIRRLRHGEHFRYRDAEGRWVRDA
DELSRIRMLAIPPAYTQVWICPLPNGHLQATGIDARGRKQYRYHADWRLFQDETKFERLE
AFGLALPRIRARVARDLQEGAATAQPGRQQVLAALVRLLDTTLLRVGNEAYTNSNGSYGL
TTLRNRHAAVQGAALRLRFKGKSGVMHEARLDDPRVAKVVRRCQQLPGQALFQYQEEDGQ
LRSVSSTDVNDYLAEASPGERFTAKDFRTWHGTVQALELTRLASEPGRTAADGTRYSAKE
ILAAVAKQLGNTPAVCKKAYVHPAVLALGSALAGDEEDPAAELLRKMSARTAARKTRGLH
AAEQRLLAFLRMHRQGQAREQREARRANGRRKAEEKRRPQPGASGKRTLSRSSATV
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgccggcccgctccagatcgtcctcctcgaccccaccgccttcgaaaccggcacccacc
gccgcgccgattgccgatggcctcgtctacgtgaaccccgacatgccgggcatccggcgc
ctgaggcacggcgagcacttccgctaccgcgatgcagagggccgatgggtgcgcgatgcg
gacgagctctcgcgcatccgcatgctggcgattccaccggcctacacgcaggtgtggatc
tgcccgctgcccaacggccatctccaggccaccggcatcgatgcccggggacgcaagcaa
taccgctaccacgccgactggcggctttttcaggacgagaccaagttcgagcgcctcgag
gccttcgggctcgctctgccgcgcatccgcgcccgcgtggcgcgcgacctgcaggaaggc
gcggccacggcacagcccgggcgccagcaggtgctggcggcgctggtgcgcctgctcgac
accacgctgctgcgcgtgggcaacgaggcgtacacgaacagcaacggctcctacggcctc
accacgctgcgcaaccggcatgcggccgtgcagggcgcggcgctgcggctgcgcttcaag
ggcaagagcggcgtgatgcacgaagcccggctggacgatccgcgcgtggcgaaggtggta
cgccgatgccaacagctgcccggccaggcgctgttccagtaccaggaggaagacggacag
ctgcgcagcgtgtcgtccaccgacgtgaacgactaccttgccgaggcctcgcccggcgag
cgcttcacggcgaaggacttccggacctggcatggcacggtgcaggcgctggaactcacg
cggctggccagcgagccgggccgcacggccgccgacggcacgcgctacagcgccaaggaa
atactggccgccgtggcgaaacagctgggcaacacgcccgcggtgtgcaagaaggcctac
gtgcacccggccgtgctggcgctgggcagcgcgctcgcgggcgacgaagaagaccctgcg
gccgagctgctgcgaaagatgtcagcccgcaccgcggcccgcaagacgcgcgggctccac
gccgcggaacagcggctgctcgccttcctgcggatgcatcggcaaggccaggcgcgcgaa
cagcgcgaggcgcgcagggccaacggcaggcgcaaggccgaagaaaaacgaaggcctcag
cccggcgcgagcggaaagcgcacgctgtcgcgctcgagcgccacggtgtag
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