Variovorax paradoxus B4: VAPA_1c14950
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Entry
VAPA_1c14950 CDS
T02835
Symbol
rnc
Name
(GenBank) ribonuclease 3 Rnc
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpd03019
]
VAPA_1c14950 (rnc)
03009 Ribosome biogenesis [BR:
vpd03009
]
VAPA_1c14950 (rnc)
03036 Chromosome and associated proteins [BR:
vpd03036
]
VAPA_1c14950 (rnc)
Enzymes [BR:
vpd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
VAPA_1c14950 (rnc)
Messenger RNA biogenesis [BR:
vpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VAPA_1c14950 (rnc)
Ribosome biogenesis [BR:
vpd03009
]
Eukaryotic type
90S particles
RNase
VAPA_1c14950 (rnc)
Prokaryotic type
rRNA processing factors
VAPA_1c14950 (rnc)
Chromosome and associated proteins [BR:
vpd03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
VAPA_1c14950 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
AGU48607
UniProt:
T1X6S8
LinkDB
All DBs
Position
1:1631541..1632227
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AA seq
228 aa
AA seq
DB search
MDGGLTALQERLKHSFSDARLLQLALTHRSFSADHNERLEFLGDSVLNLAVSHLLYTRLS
ALPEGDLSRVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIG
AVYLDAGFSAAEALVRRLYESVEINPRMDAAAKDPKTELQEWLQGHKMKLPVYRVAATLG
AAHKQTFDVECEVPELGLRERGIGGSRRAGEQAAAAAMLIRLKARGAA
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
gtggacggcggcctcacggcgctgcaggagcgcctcaagcattcgttctccgatgcgcgg
ctgctccagctcgcgctcacgcaccgcagtttttcggccgaccacaacgagcgcctcgag
ttcctcggcgattcggtgctcaatctcgcggtatcgcacctgctctacacccgactctcg
gccctgcccgagggcgatctgtcgcgtgtgcgggccaacctggtcaagcaggacaccctg
caccgcctggcgctggaactgcagctgtcgccattgctgcggctcggcgaaggcgaggcg
cgctccggcgggcccaaccggccttcgatcctggccgacgcgctcgaagcgctgatcggc
gcggtctacctcgatgccggcttttcggccgccgaggcgctggtgcggcggctctacgag
tcggtcgaaatcaatccgcgcatggacgcggcggccaaggatccgaagaccgaattgcag
gaatggctgcagggtcacaaaatgaagctgccggtgtaccgcgtggcggccacgctcggc
gcagcgcacaagcagaccttcgacgtcgagtgcgaggtgccggagctgggcctgcgcgaa
cgcggcatcggtggttcgcgacgtgccggcgagcaggctgccgcggcggccatgttgatc
cggctcaaggcacgcggggccgcgtga
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