Variovorax paradoxus B4: VAPA_1c15100
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Entry
VAPA_1c15100 CDS
T02835
Symbol
truA
Name
(GenBank) tRNA pseudouridine synthase A TruA
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpd03016
]
VAPA_1c15100 (truA)
Enzymes [BR:
vpd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
VAPA_1c15100 (truA)
Transfer RNA biogenesis [BR:
vpd03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VAPA_1c15100 (truA)
Prokaryotic type
VAPA_1c15100 (truA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
AGU48622
UniProt:
T1X6U0
LinkDB
All DBs
Position
1:complement(1644819..1645631)
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AA seq
270 aa
AA seq
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MRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAAQPIGTLCAGRTDAGVHALMQV
VHFDTAVEREPFSWMRGTNRFLPDDIAVQWAQPVPDEFHCRASALARRYLYVLSQSPVRP
SLDSGRVGWSMHALDGDAMRAAAALLVGRHDFSSFRASACQARSPVKDLRRIEITRHGSE
DRCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEWIAEVLEARSRKVAAPTFSADGL
YFLGPLYDAKWGLPAEATLQAGGAPYDGPP
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
gtgaggctggcgctaggcatccgctacaacggccaggcatacgagggctggcaaagccag
cgctcgggccgcacggtgcaggacaagctggaagccgccctcgccaagttcgcggcgcag
cccatcggcacgctgtgcgccggccgcaccgacgccggcgtgcatgcgctgatgcaggtg
gtgcacttcgacaccgccgtcgaacgcgagcccttctcctggatgcgcggcaccaaccgc
ttcctgcccgacgacatcgccgtgcagtgggcgcagccggtgcccgacgaattccattgc
cgcgccagcgcattggcgcggcgctacctctacgtgctgtcgcagtcgcccgtgcggccc
agcctcgactcgggccgggtcggctggtcgatgcatgcgctcgacggcgatgcgatgcgc
gccgccgccgccctgctggtgggcaggcacgacttcagttcctttcgcgcctcggcctgc
caggcgcgctcgccggtcaaggacctgcgccgcatcgaaatcacgcgccacggcagtgag
gaccgctgccgctggcatttcgagttcgaggccgatgccttcctgcaccacatgatccgc
aacctgatgggctgcctcgtgcgcatcggccgcggcgacgaacgtcccgaatggatcgcc
gaggtgctcgaggcgcgcagccgcaaggtggcggcacccaccttctcggcggacgggctg
tattttctcgggccgttgtacgacgccaagtggggtctgccggccgaggcgacgctgcag
gccggcggcgctccttatgatgggccgccatga
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