Variovorax paradoxus B4: VAPA_1c15210
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Entry
VAPA_1c15210 CDS
T02835
Symbol
sdhA
Name
(GenBank) succinate dehydrogenase, flavoprotein subunit SdhA
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00020
Citrate cycle (TCA cycle)
vpd00190
Oxidative phosphorylation
vpd00650
Butanoate metabolism
vpd00720
Other carbon fixation pathways
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
Module
vpd_M00009
Citrate cycle (TCA cycle, Krebs cycle)
vpd_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
vpd_M00149
Succinate dehydrogenase, prokaryotes
vpd_M00982
Methylcitrate cycle
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
VAPA_1c15210 (sdhA)
00650 Butanoate metabolism
VAPA_1c15210 (sdhA)
09102 Energy metabolism
00190 Oxidative phosphorylation
VAPA_1c15210 (sdhA)
00720 Other carbon fixation pathways
VAPA_1c15210 (sdhA)
Enzymes [BR:
vpd01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
VAPA_1c15210 (sdhA)
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
DAO
Pyr_redox_2
HI0933_like
Thi4
FAD_binding_3
GIDA
FAD_oxidored
Pyr_redox_3
NAD_binding_7
ThiF
NAD_binding_8
Motif
Other DBs
NCBI-ProteinID:
AGU48633
UniProt:
T1X7W9
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All DBs
Position
1:complement(1656946..1658754)
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AA seq
602 aa
AA seq
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MTYTKENITKRKFDVVIVGAGGSGMRASLQLARAGLNVAVLSKVFPTRSHTVAAQGGVGA
SLGNMSEDNWHYHFYDTIKGSDWLGDQDAIEFMCREAPKVVYELEHFGMPFDRNPDGTIY
QRPFGGHTANYGEKPVQRACAAADRTGHAMLHTLYQKNVEARTQFFVEWMALDLIRDAEG
DVVGVTALEMETGDLHILQAKTVLLATGGAGRIFQASTNAFINTGDGLGMAARSGIPLQD
MEFWQFHPTGVAGAGVLLTEGCRGEGAILLNSNGERFMERYAPTLKDLAPRDFVSRSMDQ
EIKEGRGCGPNKDYVLLKLDHLGAETIHKRLPSVYEIGVNFANVDITKEPIPVVPTIHYQ
MGGIPTNINGQVVIQQGDQNSAVVNGLYAVGECSCVSVHGANRLGTNSLLDLLVFGRAAG
NHIVEFNDKLKEHKPLPADAADRTLERLNRLEAATDGEYAQDVAGEIRAVMQQHAAVFRK
QASMDEGVVKIAAVRERVNAIGLKDKSKVFNTARIEALEVDNLIEVAQATMVSAAARKEC
RGAHTVEDYERPADDPVAPLGRDDANWMKHTLWYSQDNRLSYKPVNLKPLTVDSVPPKVR
TF
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacctacacaaaagaaaatatcaccaagcgcaagttcgacgtcgtgatcgtcggtgcc
ggcggctccggcatgcgcgcctcgctgcaactggcccgtgccggcctcaatgtggcggtg
ctctccaaggtgttccccacccgttcgcacaccgtcgccgcgcaaggcggcgtgggcgca
tcgctgggcaacatgagcgaggacaactggcactaccacttctacgacacgatcaagggt
tccgactggctcggcgaccaggacgcgatcgagttcatgtgccgcgaagccccgaaggtc
gtgtacgagctcgagcacttcggcatgcccttcgaccgcaaccccgacggcacgatctac
cagcgtcccttcggcggccacacggccaactacggcgagaagcccgtgcagcgcgcctgc
gccgcggccgaccgcaccggccacgcgatgctgcacacgctctaccagaagaacgtcgag
gcacgcacgcagttcttcgtcgagtggatggcactcgacctgatccgcgacgccgaaggc
gacgtggtcggcgtgaccgcgctcgaaatggaaaccggcgacctgcacatcctgcaggcc
aagaccgtgctgctggccaccggcggcgcaggccgcatcttccaggcctcgaccaacgcc
ttcatcaacaccggcgacggcctcggcatggccgcgcgttcgggcattccgctgcaggac
atggagttctggcagttccacccgaccggcgtggccggcgccggcgtgctgctgaccgaa
ggctgccgcggcgaaggcgccatcctgctcaacagcaacggcgaacgcttcatggagcgc
tatgcgcccacgctgaaggacctggcgccgcgcgacttcgtctcgcgctcgatggaccag
gaaatcaaggaaggccgcggctgcggtcccaacaaggactacgtgctgctgaagctcgac
cacctcggcgccgagaccatccacaagcgcctgccctcggtgtacgaaatcggcgtgaac
ttcgccaacgtcgacatcaccaaggagccgatccccgtggtgccgaccatccactaccag
atgggcggcattccgaccaacatcaacggccaggtcgtgattcagcaaggcgaccagaac
agcgccgtggtgaacggcctctatgcggtgggcgaatgctcctgcgtgagcgtgcacggc
gccaaccgcctgggcaccaattcgctgctcgacctgctggtgttcggccgcgcggccggc
aaccacatcgtcgagttcaacgacaagctgaaggagcacaagccgctgccggccgatgcc
gccgaccgcacgctggagcgcctgaaccgcctcgaggcagccaccgacggcgaatacgca
caggacgtggcgggcgagatccgcgccgtcatgcagcagcacgcggccgtgttccgcaag
caggcctcgatggacgagggcgtggtcaagatcgccgccgtgcgcgagcgcgtcaacgcg
atcggcctgaaggacaagtcgaaggtgttcaacaccgcccgcatcgaagcgctcgaagtc
gacaacctgatcgaagtggcgcaggccaccatggtttcggctgccgcccgcaaggaatgc
cgcggcgcgcacacggtcgaagactacgaacgcccggccgacgacccggtcgcgccgctc
ggccgcgacgacgccaactggatgaagcacacgctctggtacagccaggacaaccgcctc
tcctacaagccggtcaacctcaagccgctgacggtcgactccgttcctcccaaggtccgt
acgttctaa
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