Variovorax paradoxus B4: VAPA_1c15590
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Entry
VAPA_1c15590 CDS
T02835
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VAPA_1c15590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpd03019
]
VAPA_1c15590
Enzymes [BR:
vpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
VAPA_1c15590
Messenger RNA biogenesis [BR:
vpd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VAPA_1c15590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Plasmid_RAQPRD
DUF3010
Motif
Other DBs
NCBI-ProteinID:
AGU48671
UniProt:
T1X871
LinkDB
All DBs
Position
1:1695584..1697227
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AA seq
547 aa
AA seq
DB search
MIKKFIDKLLGKSAGGAQGKSRFGKRQEVPAEVHKIDPALVDERARNVVTTLQQAGYEAY
VVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRRAFIIGRRFRIVHVVYGRGREHEVIE
VSTFRAYMDNAAAEQVAGNERTSKGELASMKHAVDASGRVLRDNVWGPQEEDAARRDFTV
NAMYYDPANQIVVDYHNGIRDAQKLTLRMIGDPATRYREDPVRIIRAIRFSAKLAALGFK
MEAKTAAPLVESSKLLADVPQSRLFDEMLKLLQTGHAIATVEQLRKLGLVTGIYPLLDVV
VERADSPFVKAALQDTDRRVGEGKPVAPSFLLACVLWADVRDGWAQRQEGRHGQRPQPPF
PALQDAIDDVFNARIGDVSGRGKLAADMREIWMMQPRFDKRTGSTPYSLVDQARFRAAFD
FMRLRADVGEVSEAIAEWWQEFSTADDVRQQDLLEQVRDEQKTRQRVRTRDPVAPKPSRG
EPAARQRQPDAESRQDHEAEIEVDAGAVPPDGEAAAPRKRRRRRKPRTGAGGGSGSGGEG
GGSAAAE
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaattcatcgacaagctgctcggcaaatcggccggcggcgcacagggcaag
agccgcttcggcaagcgccaggaggtgccggcagaggttcacaagatcgatccagccctg
gtcgacgaacgtgccaggaacgtcgtcaccacgctccagcaggcgggctatgaggcttac
gtggtgggcggcgcggtgcgcgacctgctgctgggcctgcgccccaaggacttcgacgtg
gccaccaacgccacgcccgagcaggtcaagtcgctcttcaggcgcgctttcatcatcggg
cggcgctttcgcatcgtgcacgtggtgtacggccgcggccgcgagcacgaggtgatcgag
gtctcgaccttccgcgcctacatggacaacgccgccgccgagcaggtggccggcaacgag
cgcaccagcaagggcgagctcgcgagcatgaagcacgcggtggacgccagcggccgcgtg
ctgcgcgacaacgtctggggcccgcaggaagaagacgcggcgcgccgcgacttcaccgtg
aacgccatgtactacgacccggccaaccagatcgtggtcgactatcacaacggcatccgc
gacgcccagaagctcacgctgcgcatgatcggcgacccggcgacgcgctaccgcgaagac
ccggtgcgcatcattcgcgcgatccgcttctcggccaagctcgcggcgctcggtttcaag
atggaagccaagacggccgcgccgctggtcgaatcgagcaagctgctggccgacgtgccg
cagagccgcctgttcgacgaaatgctcaagctgctgcagaccggccatgccattgccacg
gtcgagcaactgcgcaagctgggcctggtcacgggcatctatccgctgctcgacgtggtg
gtggagcgcgccgactcgccgttcgtgaaggcggccctgcaggacaccgaccgccgcgtc
ggagaaggcaagcccgtggcgccgagcttcctcctggcctgcgtgctgtgggccgacgtg
cgcgacggctgggcccagcgccaggaaggccgccacggacagcgtccgcagccgccgttc
ccggccctgcaggacgcgatcgacgacgtgttcaacgcccgcatcggcgatgtctcgggc
cgcggcaagctcgctgccgacatgcgcgagatctggatgatgcagccgcgcttcgacaag
cgcaccggttccaccccctacagcctggtcgaccaggcgcgtttccgcgccgccttcgac
ttcatgcggctgcgcgccgacgtgggcgaggtcagcgaggccattgccgagtggtggcag
gagttcagcaccgccgacgacgtgcgccagcaagacctgctggagcaggtgcgcgacgaa
cagaagacccgccagcgcgtgcgaacgcgcgacccggtggcgccgaagccctcccgcggc
gaaccggcggcgcgccagcgccagcctgacgccgaatcgcggcaggaccacgaggccgag
atcgaggtcgatgccggcgccgtgccgcccgatggcgaagcggccgcgccgcgcaagcgc
cgccgtcgccgcaagccgcgcaccggagctggtggcggcagtggcagtggtggcgagggc
ggcgggagcgccgcagccgaatga
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