Variovorax paradoxus B4: VAPA_1c16330
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Entry
VAPA_1c16330 CDS
T02835
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03420
Nucleotide excision repair
vpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VAPA_1c16330
03430 Mismatch repair
VAPA_1c16330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c16330
Enzymes [BR:
vpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAPA_1c16330
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VAPA_1c16330
MMR (mismatch excision repair)
Other MMR factors
VAPA_1c16330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGU48743
UniProt:
T1X862
LinkDB
All DBs
Position
1:1763481..1765913
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AA seq
810 aa
AA seq
DB search
MSLFGSYDATAGAPPSPAADSPLLANLNPEQRAAVTLPAGNALILAGAGSGKTRVLTTRI
AWLLQTGQVSAGGILAVTFTNKAAKEMMTRLTAMLPVNVRGMWIGTFHGLCNRLLRAHWK
LANLPSTFQILDTQDQLSAIKRLMKQFNVDDERFPAKQTQWFIAGAKEDGLRPKDVEIRT
EDDRKKVELYQLYEEQCQREGVVDFGELMLRSYELLRDNDPVREHYQRRFRHILIDEFQD
TNRLQYAWIKMLAGNTVAGQFVPGEHNSVIAVGDDDQSIYAFRGARVGNMADFVREFDVQ
HQIKLEQNYRSYSNILDSANELISHNKKRLGKNLRTDQGPGEPVRVYESPTDLAEAQWMV
EEMRQLVRDGFDRKEMAVLYRSNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAY
LRLLENKDDDTSFLRVVNFPPRGIGARTLEQLQDAARTAGRSLHDAVSVVGGKAGANLTG
FVAKIDVLREQTQGVSLREIIELVLDHSGLVEHYKADREGADRIENLEELVNAAESFVTQ
EGFGRDAVALPIDELRQSPASQGIDPNQPVIDEPLAPDAETGETLSPLAAFLTHAALESG
DNQAQAGQDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAI
TRARKRLYLSHSQTRMLHGQTRYNVKSRFFEELPEGALKWLTPKNQAFTPSAFGYGGGYA
STRGGGGSYGSGSGGGYGGSKDTFASPPVPPQKTAPSHGLRSGMQVFHNKFGEGTVLSLE
GTGDDARAQVKFTRHGVKWLALSVAKLTPV
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttttcggctcgtacgacgccactgccggcgcacccccatccccagcggccgat
tcgcccctgctcgccaacctcaacccggaacagcgcgccgcggtcaccctgcctgcgggc
aatgccctgatcctcgccggcgccggctcgggcaagacgcgggtgctgaccacccgcatc
gcctggctgctgcagaccggccaggtctccgccggcggcatcctggccgtgaccttcacc
aacaaggccgccaaggaaatgatgacgcggctgacggcgatgctgccggtcaacgtgcgc
ggcatgtggatcggcaccttccacggcctgtgcaaccgcctcctgcgcgcgcactggaag
ctggccaacctgccgtccaccttccagatcctcgacacgcaggaccagctctcggccatc
aagcggctgatgaagcagttcaatgtcgacgacgagcgctttccggccaagcagacccag
tggttcattgccggcgccaaggaagacggcctgcgtccgaaagacgtcgaaatccgcacc
gaggacgaccgcaagaaggtcgagctctaccagctctacgaagagcagtgccagcgcgaa
ggcgtggtcgatttcggcgagctcatgctgcgcagctacgagctcctgcgcgacaacgac
ccggtgcgcgagcactaccagcggcgcttccgccacatcctgatcgacgagttccaggac
accaaccgcctgcagtacgcgtggatcaagatgctcgcgggcaacaccgtcgctggccag
ttcgtgccgggcgagcacaacagcgtgatcgcggtgggcgacgacgaccagagcatctac
gcctttcgcggtgcgcgcgtgggcaacatggccgacttcgtgcgcgagttcgacgtgcag
caccagatcaagctggagcagaactaccgcagctacagcaacatcctcgactcggccaac
gagctcatcagccacaacaagaagcgcctgggcaagaacctgcgcaccgaccagggcccc
ggcgagccggtgcgcgtgtacgagtcgcccaccgacctggccgaggcgcagtggatggtc
gaggaaatgcgccagctcgtgcgcgacggcttcgaccgcaaggaaatggccgtgctctac
cgcagcaatgcgcagagccgggtgatcgaaacggcgcttttcaacgcctcggtgccgtac
cgcgtgtacggcggcctgcgcttcttcgagcgcgccgagatcaagcacgcgctggcctac
ctgcgcctgctcgagaacaaggacgacgacaccagcttcctgcgggtggtcaactttccg
ccgcgcggcatcggcgcgcgcacgctggagcagctgcaggatgcggcgcgaacggcgggg
cgttcgctgcacgatgcggtgagcgtcgtcggcggcaaggccggtgccaacctcactggc
ttcgttgccaagatcgacgtgctgcgcgagcagacccagggcgtgagcctgcgcgagatc
atcgagctggtgctcgaccacagcggcctcgtcgaacactacaaggccgaccgcgaaggc
gccgaccggatcgagaatctggaagagctggtgaacgcggccgagagcttcgtcacgcag
gaaggcttcggccgcgatgcagtggcgctgcccatcgacgaactgcgccagtcgcccgcg
agccagggcatcgacccgaaccagcccgtcatcgacgagccgctcgcgcccgatgccgaa
accggcgaaacactgagcccgctggccgcgttcctcacgcatgcagcgctcgagtcgggc
gacaaccaggcgcaggccgggcaggacgcggtgcagttgatgaccgttcacgccgccaag
ggcctggagttcgactgcgtgttcatcaccggcatggaagagggcctgttcccgcacgag
aactcgatgagcgatttcgagagcctcgaggaagagcgccgcctgatgtacgtggcgatc
acgcgcgcgcgcaagcgcctgtacctgagccattcgcaaacgcgcatgctgcacggccag
acgcgctacaacgtgaagagccgcttcttcgaagagctgcccgaaggcgcgctcaagtgg
ctcacgccgaagaaccaggccttcacgccctcggccttcggctatggcggcggctatgcc
agcacgcgcggcggcggtggcagttacggcagcggcagcggtggcggctacggtggcagc
aaggacaccttcgcgagcccgccggtgccgccgcagaagaccgcgccctcgcacggcctg
cgctcgggcatgcaagtgttccacaacaagttcggcgaaggcacggtgctgtcgctcgaa
ggcacgggcgacgacgcgcgcgcgcaggtcaagttcacccggcatggcgtgaagtggctc
gccctgtcggtggccaagctcacgccggtgtga
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