Variovorax paradoxus B4: VAPA_1c16370
Help
Entry
VAPA_1c16370 CDS
T02835
Symbol
polA
Name
(GenBank) DNA polymerase I PolA
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03030
DNA replication
vpd03410
Base excision repair
vpd03420
Nucleotide excision repair
vpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VAPA_1c16370 (polA)
03410 Base excision repair
VAPA_1c16370 (polA)
03420 Nucleotide excision repair
VAPA_1c16370 (polA)
03440 Homologous recombination
VAPA_1c16370 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpd03032
]
VAPA_1c16370 (polA)
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c16370 (polA)
Enzymes [BR:
vpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VAPA_1c16370 (polA)
DNA replication proteins [BR:
vpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VAPA_1c16370 (polA)
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
VAPA_1c16370 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VAPA_1c16370 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AGU48747
UniProt:
T1X746
LinkDB
All DBs
Position
1:1768343..1771195
Genome browser
AA seq
950 aa
AA seq
DB search
MPVRARQNGPMTDKKTLLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTA
LRREVRADYAACIFDAPGKTFRDDLYPEYKANRSPMPDDLRSQIDPIHEVVKLMGWPVLC
VPDIEADDVIGTLAKTAAGQGIEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTSE
FGVPPNLMIDYQTLVGDAVDNVPGVEKVGPKTAAKWLLEYGSLDALIERAAEVKGQAGEN
LRKALGKLPLSRQLVTIRTDCDLATHVAGLPSLEGLPVGAPQTAELKPFYERFGFKSLVK
SIEALEVPPELIEENIKKQMARGGAASTDQGGLFDESTELGALEAAAPASNLQYETITTW
EQFDAWLAKLEAAELAAIDTETTSLDEMVARIVGVSFSIEPGAAAYIPLTHNYPDAPAQL
PIDDVLARLKPWLENPAKKKLGQHIKYDRHVLANHGIEVQGYAHDTMLQSYVLEAHRPHG
LASLAERHLGRSGISYEDLCGKGAHQIPFSQVDIAKAAEYSCEDSDQTLDVHLALWPQIE
RDEKLRFIYQLEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQEAYEIAGQPF
NLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHRGLSKLKG
TYTDKLGQLANPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAPAG
SVIASADYSQIELRIMAHISGDESLLRAFRDGIDVHRATAAEVFGSTPDQVSSEQRRYAK
VINFGLIYGMSSFGLARNLGIETKAAASYIERYFARYPGVKAYMDETKALAKEKGYVETV
FGRRLYLPEINSPNGPRRGGAERAAINAPMQGTAADLIKLSMIKVQNVLDEEKRATRMIM
QVHDELVFEVPEAEVEWVRTEIPRLMAGVAELKVPLLAEIGIGPNWDKAH
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgccggtccgggcacggcaaaatggcccgatgaccgacaagaaaacgctgctgctcgtc
gatggctcgagctatctctaccgcgccttccatgccatgcccgacctgcgggcagtgccc
ggcgacccgaagagccccgcgaccggcgccatccgcggaatgatcaacatgatgacggcg
ctgcgccgcgaggtgcgcgccgactacgcggcctgcatcttcgatgcgcccggcaagact
ttccgcgacgacctgtaccccgaatacaaggccaaccgctcgccgatgcccgacgacctg
cgcagccagatcgaccccatccacgaggtggtgaagctgatgggatggccggtgctgtgc
gtgcccgacatcgaggccgacgacgtgatcggcacgctcgccaagaccgcagccgggcag
ggcatcgaggtcatcgtttccagcggcgacaaggacctgagccagctggtggacgagcac
atcaccatcatcgacacgatgaacggcaagaagcgcgacgtggcgggagtcacgtcggag
ttcggcgtgccgcccaacctgatgatcgactaccagacgctggtcggcgatgccgtcgac
aacgtgcccggcgtcgagaaggtcggccccaagacggccgccaaatggctgctcgaatac
ggctcgctcgacgcgctgatcgagcgcgcggccgaggtgaaggggcaagccggcgagaac
ctgcgcaaggccttgggcaagctaccgctgagccgccagctcgtcaccatccgcaccgat
tgcgacctggccacgcacgtcgccggcctgccttcgctcgaaggcctgccggtgggcgcg
ccgcagaccgccgagctcaagcccttctacgaaaggttcggcttcaagagcctggtcaag
tcgatcgaggcgctggaagtgccgcccgagctgatcgaggagaacatcaagaagcagatg
gcccgcggtggcgccgcgagcaccgaccagggtggcctgttcgacgaatcgaccgagctc
ggcgcgctggaggccgctgcgcccgcgagcaacctccagtacgagaccatcaccacctgg
gagcagttcgacgcctggctcgccaagctcgaggccgccgagctggccgccatcgacacc
gagaccacgtcgctcgacgaaatggtcgcgcgcatcgtcggcgtgagcttcagcatcgag
cccggcgcggcggcctacattccgctcacgcacaactatcccgacgcgcccgcgcagctg
cccatcgacgacgtgctcgccaggctcaagccctggctcgaaaacccggcgaagaagaag
ctcggccagcacatcaagtacgaccgccacgtgctcgccaaccacggcatcgaggtgcag
ggctatgcgcacgacaccatgctgcaaagctatgtgctcgaggcgcaccggccgcacggc
ctcgcaagcctggccgaacgccacctgggccgcagcggcatctcgtacgaagacctgtgc
ggcaagggcgcgcaccagatcccgttcagccaggtcgacatcgccaaggccgccgaatat
tcgtgcgaggacagcgaccagacgctcgacgtccacctggcgctgtggccgcagatcgag
cgcgacgagaagctgcgcttcatctaccagctcgagatggattcgagcgaggcgctctac
cgcgtcgagcgcaacggcgtgctgatcgacgcgcccacgctcgccgcacagagtcacgaa
ctcggcacgcgcatcatggcgctcgagcaggaggcctacgagatcgcgggccagcccttc
aacctgggctcgcccaagcagatcggcgagatattcttcaccaagctgggcctgccggtg
gtcaagaagacgccgagcggcgcacccagcaccgacgaggaagtgctcgagaaactggcc
gaggactatccgctgccggccaagatcctcgagcaccgcggcctgtccaagctcaagggc
acgtacaccgacaagctgggccagctcgccaacccgcgcaccggccgcgtccacacgcac
tatgcgcaggcggtggcggtcacggggcgcctgtcgagcaacgatcccaacctgcagaac
atcccgatccgcacgcccgaaggccgccgcgtgcgcgaagccttcattgcgccggccggc
agcgtgatcgcgagcgccgactactcgcagatcgagctgcgcatcatggcccacatcagc
ggcgacgagtcgctgctgcgcgccttcagggacggcatcgacgtgcaccgcgccactgcg
gcggaggtgttcggctccacgcccgaccaggtgtcgagcgagcagcggcgctatgccaag
gtgatcaacttcgggctcatctacggcatgagcagcttcggcctggcgcgcaacctgggc
atcgagaccaaggccgcggcttcctacatcgaacgctacttcgcgcgctatccgggcgtg
aaggcgtacatggacgagaccaaggcgctggccaaggaaaagggctacgtcgagaccgtg
ttcggccggcgcctctacctgcccgagatcaattcgcccaacggtccgcgccgcggcggc
gccgagcgcgcggccatcaacgcgccgatgcagggcacggcggccgacctgatcaagctc
agcatgatcaaggtacagaacgtgcttgacgaagaaaagcgcgccacccgcatgatcatg
caggtgcacgacgaactggtgttcgaagtacccgaggccgaggtcgaatgggtgcgcacc
gaaatcccgcgcctgatggccggcgtggcggaactcaaggtgccgctgctggccgagatc
ggcatcggtcccaactgggacaaggcgcactga
DBGET
integrated database retrieval system
