Variovorax paradoxus B4: VAPA_1c18880
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Entry
VAPA_1c18880 CDS
T02835
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpd03009
]
VAPA_1c18880 (rlmD)
Enzymes [BR:
vpd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VAPA_1c18880 (rlmD)
Ribosome biogenesis [BR:
vpd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VAPA_1c18880 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_25
RrnaAD
Methyltransf_31
Methyltransf_11
TPMT
TRAM
MTS
PCMT
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
AGU48994
UniProt:
T1X9I3
LinkDB
All DBs
Position
1:2019182..2020630
Genome browser
AA seq
482 aa
AA seq
DB search
MTESIEEKKVPAKTPATARDEWLKVESLDLDAQGVAHNAEGMVVFIEGALPFEEVQFNVH
RRKNNWEQGTVTAIRRESSQRVRPGCPHFGLHTGACGGCKMQHLDEAAQVAVKQRALEDN
LWHLGKVRPDNVLRPLEGPAWHYRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPV
LPKQVSDMLMPLRALIGSLDARETCPQIELACGDAPGTTSLGTIALVLRHLEPLSNADVG
RLKAFAAQNAGVQWWLQAKGPDTVKLLEEGGMPLSYELPQFGVTMPFKPTDFTQVNPHIN
RALVGKALRLLDVQANERVIDWFCGLGNFTLPLASRAREVLGIEGSDTLVARASDNFKKN
QPATSARRALSATRFVARNLFEMTPAMLVADGSADKWLVDPPREGAFALAKAMADLHLQP
ELRTDGWTPPKRIVYVSCNPSTLARDAGLLVHQAGYRCTFAGVINMFPHTAHVESIAVFD
LA
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatccatcgaagaaaagaaagtccccgcgaaaaccccggcgaccgcgcgtgac
gaatggctcaaggtcgagtcgctcgacctcgacgcgcaaggcgtcgcgcacaacgccgag
ggcatggtcgtgttcatcgagggcgccctgcctttcgaagaggtgcagttcaacgttcat
cgccgcaagaacaactgggagcagggcacggtcacggccatccggcgcgaatcgtcgcag
cgcgttcggcctggctgcccgcatttcggtttgcacaccggtgcgtgcggcggctgcaag
atgcagcatctggatgaggcggcgcaggttgcggtgaagcagcgcgccctcgaggacaac
ctgtggcacctcggcaaggtacggcccgacaacgtgctgcggccgctggaaggcccggca
tggcactaccgctaccgcgcgcggctttcggtgcgccatgtggtcaagaagggcaccgtg
ctgatcggcttccatgagcgcaagagccggtatctcgccgacatgcaggtctgcccggtg
ctgccgaagcaggtcagcgacatgctgatgcccttgcgcgcattgatcggttcgctggac
gcccgcgagacctgcccgcagatcgagctcgcctgcggcgatgcgcccggtacgacctcg
ctcggcacgattgcattggtgctgaggcacctggagccgctctccaatgcggacgtcggc
cgcctgaaggcctttgcagcgcagaacgccggcgtccagtggtggctgcaggccaagggg
ccggacacggtgaagctgctggaagaaggcggtatgccgctgtcctacgagctgccccag
ttcggtgtgacgatgccgttcaagcccaccgatttcacgcaggtcaatccgcacatcaat
cgcgccctggtggggaaggcgctgcgccttctcgacgtacaggcgaacgagcgcgtgatc
gactggttctgcggcctcggcaacttcaccctgccgctggccagccgtgctcgcgaggtt
ctgggcatcgagggcagcgacaccctggtcgcacgcgcgagcgacaacttcaagaagaac
cagcctgccacatccgccagacgggcgctgtcagcaacccggttcgtggcccgcaacctc
ttcgaaatgacccctgccatgctggtggccgatggcagcgccgacaagtggctggtcgac
ccgccgcgcgagggcgcctttgcgctggccaaggccatggccgatctgcacctgcagccc
gagcttcgaaccgatggctggacgccgccgaagcgcatcgtgtacgtgagctgcaatccg
tccaccctggcgcgggacgccggcctgctggtgcaccaggccggataccgttgcacgttc
gcgggggtgatcaacatgttcccgcacacggcgcacgtcgagtcgattgcggtgttcgat
ctggcatga
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