Variovorax paradoxus B4: VAPA_1c19260
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Entry
VAPA_1c19260 CDS
T02835
Name
(GenBank) putative long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00061
Fatty acid biosynthesis
vpd00071
Fatty acid degradation
vpd01100
Metabolic pathways
vpd01212
Fatty acid metabolism
vpd02024
Quorum sensing
vpd04146
Peroxisome
Module
vpd_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
VAPA_1c19260
00071 Fatty acid degradation
VAPA_1c19260
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
VAPA_1c19260
09145 Cellular community - prokaryotes
02024 Quorum sensing
VAPA_1c19260
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vpd01004
]
VAPA_1c19260
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpd04147
]
VAPA_1c19260
Enzymes [BR:
vpd01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
VAPA_1c19260
Lipid biosynthesis proteins [BR:
vpd01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
VAPA_1c19260
Exosome [BR:
vpd04147
]
Exosomal proteins
Exosomal proteins of breast milk
VAPA_1c19260
Exosomal proteins of breast cancer cells
VAPA_1c19260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
AGU49032
UniProt:
T1X7X0
LinkDB
All DBs
Position
1:complement(2053050..2054870)
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AA seq
606 aa
AA seq
DB search
MTDAALPSLTLPQMLREQARLRPQRIAIRQKDFGIWHPLDWAGYLRRASRFGLGLHAMGL
APGGHLGVISENRVEWLLAQMGAGLIGAVTVGVYPTSPSNEVAYVVGHADIEVIVCEDQE
QTDKVLDAIGQLPRLRKIVVIETKGLASYAPEVRALIATFAEVEQAGAEVHAREGDALID
AALARQTLADIGLMIYTSGSTGKPKGAMISYRNIRGVVPGIVERLALDGDTTHLSYLPLC
HVAEQMLTAFVPVYLGSQVNFGESIRTVQEDLREVAPTMFLGVPRIWEKLHAGISIKMQE
AGRLQRALFRRALAACAPLAEKPRSAWTLAERGRFALAYWTVLRALQNFIGLRRARVALT
GAAPIPADVVRFFRTLGVPLVEVYGLTESTGMIAGHRSDAVRIGTVGPPTLGTKHRIGEA
GELLVRGEMVFEGYYRNPEATESSVRDGWLYTGDVVREEDGQLRIVDRLKDIMITAGGKN
LTPSEIENTMKGSPFIKECIVVADGRKFVGALLQIDYETVGKWAEAERIPFTHFRSLVEE
PRVRALIESEVSRGNDRLAQVSQIRRFHLLTKELDHDDGEVTATMKVRRSSIYKAYAEEI
EALYRA
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgccgcgcttccctcgctgacattgccgcagatgctgcgcgaacaggcgcgc
ttgcggccccaacgcatcgcgatccgccagaaggacttcggcatctggcatccgctggac
tgggccggctacctgcgccgcgcatcccgcttcggcctcggcctgcatgcgatgggcctg
gcgccgggcgggcatctcggcgtgatctccgagaaccgcgtcgagtggctgctcgcgcag
atgggtgccggcctgatcggcgccgtgaccgtgggcgtctacccgaccagcccgagcaac
gaggtggcctatgtggtcggccatgcggacatcgaggtgatcgtctgcgaggaccaggaa
cagaccgacaaggtgctcgacgccatcggccagctgccgcgcctgcgcaagatcgtcgtg
atcgagaccaagggcctcgcgagctatgcgcccgaagtgcgcgcactcatcgcgaccttt
gccgaggtggaacaggccggcgccgaagtgcacgcgcgcgagggcgacgcgctgatcgac
gccgcgctggcgcgccagacgctcgccgacatcggcctgatgatctacacctcgggctcc
accggcaagcccaagggcgcgatgatctcgtaccgcaacatccgcggcgtggtgcccggc
atcgtcgagcggctggcgctcgacggcgacaccacgcacctctcgtacctgccgctgtgc
cacgtggccgagcagatgctcacggccttcgtgccggtctacctgggctcgcaggtgaac
ttcggtgaatcgatccgcaccgtgcaggaagacctgcgcgaagtggcgcccaccatgttc
ctcggcgtaccgcgcatctgggaaaagctgcatgcgggcatcagcatcaagatgcaggag
gcgggacgcctgcaacgcgcgctgttccgtcgcgcgctcgcggcctgcgcgccgctggcc
gagaagccgcgcagcgcctggaccctggccgagcgcggccgattcgccctcgcctattgg
acggtgctgcgcgcgctgcagaacttcatcggcctgcggcgcgcgcgcgtcgcactgacc
ggcgcggcgccgattccggccgacgtggtgcgcttcttccgcacgctgggcgtgccgctg
gtggaggtgtacggcctcaccgaatcgaccggcatgatcgccggccaccgcagcgatgcc
gtgaggatcggcaccgtcggcccgccgacgctgggcacgaagcaccgcatcggcgaagcg
ggcgaactgctggtgcgcggcgagatggtgttcgagggctactacaggaaccccgaggcc
accgagtcgtcagtccgcgacggctggctgtacacgggcgacgtggtgcgcgaggaagac
ggccagcttcgcatcgtcgaccgcctgaaggacatcatgatcacggccggcggcaagaac
ctcacgccctcggaaatcgagaacaccatgaagggcagccccttcatcaaggaatgcatc
gtggtggcggacgggcgcaagttcgtcggcgcgctgctgcagatcgactacgaaacagtg
ggaaagtgggccgaggccgagcgcattccgttcacgcacttccgctcgctggtggaagag
ccgcgggtgcgcgcgctgatcgaatcggaagtttcccgcggcaacgacaggctcgcacag
gtgtcgcagatccggcgttttcacctgctcacaaaagagttggaccacgacgacggcgaa
gtcaccgcaaccatgaaggtgcggcgctccagcatctacaaggcttacgccgaagagatc
gaggcgctgtaccgcgcctga
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