Variovorax paradoxus B4: VAPA_1c23430
Help
Entry
VAPA_1c23430 CDS
T02835
Symbol
pdhL
Name
(GenBank) dihydrolipoyl dehydrogenase PdhL
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00010
Glycolysis / Gluconeogenesis
vpd00020
Citrate cycle (TCA cycle)
vpd00260
Glycine, serine and threonine metabolism
vpd00280
Valine, leucine and isoleucine degradation
vpd00310
Lysine degradation
vpd00380
Tryptophan metabolism
vpd00620
Pyruvate metabolism
vpd00630
Glyoxylate and dicarboxylate metabolism
vpd00640
Propanoate metabolism
vpd00670
One carbon pool by folate
vpd00785
Lipoic acid metabolism
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
vpd01210
2-Oxocarboxylic acid metabolism
vpd01240
Biosynthesis of cofactors
Module
vpd_M00009
Citrate cycle (TCA cycle, Krebs cycle)
vpd_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
vpd_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
vpd_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
vpd_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
VAPA_1c23430 (pdhL)
00020 Citrate cycle (TCA cycle)
VAPA_1c23430 (pdhL)
00620 Pyruvate metabolism
VAPA_1c23430 (pdhL)
00630 Glyoxylate and dicarboxylate metabolism
VAPA_1c23430 (pdhL)
00640 Propanoate metabolism
VAPA_1c23430 (pdhL)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
VAPA_1c23430 (pdhL)
00280 Valine, leucine and isoleucine degradation
VAPA_1c23430 (pdhL)
00310 Lysine degradation
VAPA_1c23430 (pdhL)
00380 Tryptophan metabolism
VAPA_1c23430 (pdhL)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
VAPA_1c23430 (pdhL)
00670 One carbon pool by folate
VAPA_1c23430 (pdhL)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpd04147
]
VAPA_1c23430 (pdhL)
Enzymes [BR:
vpd01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
VAPA_1c23430 (pdhL)
Exosome [BR:
vpd04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
VAPA_1c23430 (pdhL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Biotin_lipoyl
Pyr_redox
FAD_oxidored
GIDA
Thi4
AlaDh_PNT_C
FAD_binding_2
NAD_binding_8
Pyr_redox_3
Biotin_lipoyl_2
FAD_binding_3
HI0933_like
DEC-1_N
DAO
GCV_H
Lycopene_cycl
Motif
Other DBs
NCBI-ProteinID:
AGU49445
UniProt:
T1XB94
LinkDB
All DBs
Position
1:2499738..2501567
Genome browser
AA seq
609 aa
AA seq
DB search
MSEQQIKVPDIGDFDEVAVIEVLVNVGDTVKAEQSLITVESDKASMEIPSSAAGVVKSLA
VKVGDKVKEGSVVLTLEVDGAAAPAPAAAAPAPASAAAAPAPKAAPAPAPAAAPVASTYG
GKVDVECDVIVLGAGPGGYSAAFRAADLGLKVVLIERYATLGGVCLNVGCIPSKALLHVA
SVMDEVKHFADLGVSFAAPTVDRAKLLGHKNKVVGKLTGGLTAMAKMRKVTVLRGVGNFI
DPYHLEVEETSGTSWDTTGKKQTVKFRNAIIAAGSQAVSLPFMPKDPRVVDSTGALEMGT
DPKRMLILGGGIIGLEMGTVYSTLGARLDVVEMLDGLMQGADRDLVKVWQKMNAPRFDNI
MLKTKTVGAEATKEGIKVTFEGEQAPKEPQVYDLVLQAVGRSPNGKKIGAEKAGVAVSDR
GFIPVDIQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEVIAGEQKGDKELSSAAFNA
RVIPSVAYTDPEVAWVGLTEDQAKAEGIKIKKGHFPWTASGRAIANGRDEGFTKLLFDAE
THRILGGGIVGTHAGDMIGEIALAIEMGADEIDIGKTIHPHPTLGESIGMAAEVAHGTCT
DLPPAKKAA
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacaacaaatcaaggtgcccgacatcggcgacttcgacgaagtcgcggtgatc
gaggtgctggtcaatgtcggcgacacggtcaaggccgagcagtcgctgatcacggtcgaa
tcggacaaggcctcgatggagattccgtcgtcggcagccggcgtggtgaagtcgctggcg
gtcaaggtgggcgacaaggtcaaggaaggctccgtggtgctgacgctggaggtggacggt
gccgcggcgcctgcaccggcggcagctgcgcccgcgccagcctctgcggctgctgctccc
gcacccaaggcagcgccggcaccggctccggcggctgcgcccgtggcgtccacctatggc
ggcaaggtcgatgtcgaatgcgacgtgatcgtgctcggcgccggccccggcggctactcg
gccgcgttccgtgcggccgacctgggcctcaaggtggtgctgatcgaacgctacgccacg
ctcggcggcgtgtgcctgaacgtcggctgcattccttcgaaggcgctgctgcacgtcgcc
tccgtcatggacgaggtcaagcacttcgccgacctgggcgtgagctttgccgcgcccacg
gtcgaccgcgccaagctgctcggccacaagaacaaggtggtgggcaagctcacggggggc
ctcacggccatggccaagatgcgcaaggtgacggtgctgcgcggcgtcggcaacttcatc
gacccgtaccacctcgaggtggaagaaacgtcgggcaccagttgggacaccacgggcaag
aagcagaccgtcaagttccgcaacgcgatcatcgcggccggctcgcaggccgtgagcctg
ccgttcatgcccaaggacccgcgcgtggtcgactccaccggcgcgctcgagatgggcacc
gaccccaagcgcatgctgatcctgggcggcggcatcatcggcctcgaaatgggcacggtg
tattcgacgctgggcgcgcgcctggacgtggtcgagatgctcgacggcctgatgcagggc
gccgaccgcgacctcgtcaaggtctggcagaagatgaacgcgccgcgcttcgacaacatc
atgctcaagaccaagacggtcggcgccgaggccacgaaggagggcatcaaggtgaccttc
gagggcgagcaggcaccgaaggagccgcaggtctacgacctcgtgctgcaggccgtgggc
cgcagcccgaacggcaagaagatcggcgccgagaaggccggcgtcgcggtgagcgaccgc
ggcttcatcccggtcgacatccagatgcgcaccaacgtgccgcacatctttgccatcggc
gacatcgtgggccagccgatgctggcgcacaaggcggtgcacgaggcgcatgtggcggcc
gaggtgatcgccggcgagcagaagggcgacaaggagctctcgagcgctgccttcaacgcc
cgcgtgatcccgagcgtggcctacaccgacccggaagtggcgtgggtggggctcaccgaa
gaccaggccaaggccgaaggcatcaagatcaagaagggccattttccgtggaccgcgtcg
ggccgcgccatcgccaacggccgcgacgaaggtttcaccaagctgctgttcgacgccgag
acccaccgcatcctgggcggcggcatcgtcggcacgcatgccggcgacatgatcggcgag
attgcgctggccatcgagatgggcgccgacgagatcgacatcggcaagaccatccatccg
catccgacgctgggcgagagcatcggcatggcggccgaggtggcacacgggacctgtacc
gatctgccaccggccaagaaggcggcctga
DBGET
integrated database retrieval system
