Variovorax paradoxus B4: VAPA_1c23630
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Entry
VAPA_1c23630 CDS
T02835
Symbol
ndk
Name
(GenBank) nucleoside diphosphate kinase Ndk
KO
K00940
nucleoside-diphosphate kinase [EC:
2.7.4.6
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00230
Purine metabolism
vpd00240
Pyrimidine metabolism
vpd01100
Metabolic pathways
vpd01110
Biosynthesis of secondary metabolites
vpd01232
Nucleotide metabolism
vpd01240
Biosynthesis of cofactors
Module
vpd_M00049
Adenine ribonucleotide biosynthesis, IMP => ADP,ATP
vpd_M00050
Guanine ribonucleotide biosynthesis, IMP => GDP,GTP
vpd_M00052
Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP
vpd_M00053
Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
vpd_M00938
Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
VAPA_1c23630 (ndk)
00240 Pyrimidine metabolism
VAPA_1c23630 (ndk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vpd04131
]
VAPA_1c23630 (ndk)
Enzymes [BR:
vpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.4 Phosphotransferases with a phosphate group as acceptor
2.7.4.6 nucleoside-diphosphate kinase
VAPA_1c23630 (ndk)
Membrane trafficking [BR:
vpd04131
]
Exocytosis
Calcium ion-dependent exocytosis
Kinases and associated proteins
VAPA_1c23630 (ndk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NDK
Motif
Other DBs
NCBI-ProteinID:
AGU49465
UniProt:
T1XBB4
LinkDB
All DBs
Position
1:2525079..2525504
Genome browser
AA seq
141 aa
AA seq
DB search
MAIERTLSIIKPDAVAKNVIGKIVSRFEAAGLKIVAAKLVHLSRNEAEQFYAVHKERPFF
KDLVDFMISGPVFVQVLEGENAIAKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSD
APETAANEVAFFFAGLNVYAR
NT seq
426 nt
NT seq
+upstream
nt +downstream
nt
atggctatcgaacgtaccctttccatcatcaagcccgacgccgtcgccaagaacgtcatc
ggcaagatcgtttcccgcttcgaagctgccggcctcaagatcgttgccgccaagctggtg
catctgtcgcgcaacgaagccgagcagttctacgcggtccacaaggaacgtccgttcttc
aaggacctggtcgatttcatgatctccggccccgtgttcgtgcaagtgctcgaaggcgag
aacgccatcgccaagaaccgcgacctgatgggtgccacggaccccaagaaggcggccccc
ggcaccatccgcgccgacttcgccgacagcatcgacgccaacgccgtgcacggttcggac
gctcccgaaaccgccgccaacgaagtggcgttcttcttcgccggcctcaacgtctacgcg
cgctga
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