Variovorax paradoxus B4: VAPA_1c23680
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Entry
VAPA_1c23680 CDS
T02835
Symbol
hisS
Name
(GenBank) histidine--tRNA ligase HisS
KO
K01892
histidyl-tRNA synthetase [EC:
6.1.1.21
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
VAPA_1c23680 (hisS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
vpd01007
]
VAPA_1c23680 (hisS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpd03016
]
VAPA_1c23680 (hisS)
Enzymes [BR:
vpd01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.21 histidine---tRNA ligase
VAPA_1c23680 (hisS)
Amino acid related enzymes [BR:
vpd01007
]
Aminoacyl-tRNA synthetase
Class II (A)
VAPA_1c23680 (hisS)
Transfer RNA biogenesis [BR:
vpd03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
VAPA_1c23680 (hisS)
Prokaryotic type
VAPA_1c23680 (hisS)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_His
tRNA-synt_2b
HGTP_anticodon
tRNA-synt_2d
tRNA-synt_2
Motif
Other DBs
NCBI-ProteinID:
AGU49470
UniProt:
T1XBC2
LinkDB
All DBs
Position
1:2529766..2531088
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AA seq
440 aa
AA seq
DB search
MADKINAVKGMNDILPASVPRIDRLPDSALWSWFEQTVRGLLVRYGYQYMLTPVVEPTAL
FVRGLGEVTDIVEKEMYSFTDAMNGDKLTLRPEATAGIVRAMVEHNALYNGPLRLWTMGP
MFRHERPQKGRYRQFHQLDVEALGFHGPDVDAELILMVRALWRELGLVEGEHVRLEINSL
GQPAERQAHREALIRHFEAHADVLDADAQRRLHSNPLRILDTKNPAMQAVVEAAPQLMDF
LGEESRAHFDAVCDVLDAAGLAYRINPRLVRGMDYYNLTVFEWVTDQLGSQGTVCGGGRY
DGLIGQMGGKPAPAVGFGLGIERLLLLVQELRLPVPAAAPAAYAVVPSAAALPQVMVVLE
QLRAAGVSVLQHAGGGSMKAQFKKADASGARYALIFGEDELSRGEVTVKSLREGGGEQVA
RPLAEVATWAATLQSPASNI
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagatcaatgccgtcaaaggcatgaacgacatattgccggcgagcgtgccg
cgcatcgaccgcctgcccgattcggccctctggtcgtggttcgagcagacggtgcgcggg
ctcctggtccgctacggctaccagtacatgctgacgccggtggtcgaacccacggcgctg
ttcgtgcgcggactgggcgaggtgaccgatatcgtcgagaaggagatgtactccttcacc
gacgcgatgaacggcgacaagctcacgcttcgccccgaggccaccgccggcatcgtgcgc
gccatggtcgagcacaacgcgctctacaacggcccgctgcgcctgtggacgatggggccg
atgttccgccacgagcgtccccagaagggccggtaccgccagttccaccagctcgacgtc
gaggcgttgggctttcatggtccggacgtggacgccgagctgatcctcatggtgcgggcg
ctgtggcgcgagctcgggctggtcgagggcgagcacgtgcgcctggagatcaacagcctg
ggccagccggccgagcgccaggcgcaccgcgaagcgctgatccgccatttcgaggcgcat
gccgacgtgctcgatgccgatgcgcagcggcgcctgcacagcaatccgctgcgtatcctc
gataccaagaatcccgccatgcaggccgtggtggaggccgcgccccaactgatggacttc
ctcggcgaggagtcgcgtgcacacttcgatgcggtgtgcgatgtgctcgatgccgcaggg
ctggcctaccgcatcaacccgcgcctggtgcgcgggatggactattacaacctgaccgtc
ttcgaatgggtcaccgaccagctcggctctcagggcaccgtctgtggaggagggcgctat
gacggcctcatcggccagatgggcggcaagcctgcaccggccgtaggcttcggcctgggc
atcgagcggctgttgctgctggtccaggaactccgcctgccggtccccgccgcggcgccc
gcggcctacgccgtcgtgccgtcggccgccgcgctgccgcaggtcatggtcgtgctcgag
cagttgcgcgccgccggcgtgagcgtgctgcagcatgcgggcggcggcagcatgaaggcg
cagttcaagaaggccgacgcgagcggagcgcgctatgcgctgatctttggcgaggacgag
ctgtcgcgtggcgaagtcaccgtcaaatcgctgcgcgagggcggtggcgaacaggtggcg
cggccgctcgccgaggtggccacctgggccgccaccctacaatcgccggcttccaacatc
tga
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