Variovorax paradoxus B4: VAPA_1c24640
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Entry
VAPA_1c24640 CDS
T02835
Name
(GenBank) PD-(D/E)XK nuclease superfamily domain-containing protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c24640
Enzymes [BR:
vpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAPA_1c24640
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
VAPA_1c24640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Cas_Cas4
Motif
Other DBs
NCBI-ProteinID:
AGU49564
UniProt:
T1XB75
LinkDB
All DBs
Position
1:2619228..2621822
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AA seq
864 aa
AA seq
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MNEGHPVQALWCDPADGVVARIAGAIAQRGLHAARTVVLVPYAQLMGVAHDMWSRCGGPG
FAPRFETTRNWARSAGGFLPTGYDIAFDMARDLVTAQALLSQAGFAAERFALAGRVVELA
YQLAPLAAAALPEVRGSEWAQRAAHVAEAGSESEWFRIESALIRVAVAWAANSGYATDVL
LRDAVRAQVDALIVLGGFQADPLTQTLCTLWGDRAIHLSLVPANPAATTAGAHVAADPED
EAELAAACVLRHLAAGRAPVALIATDRALTRRIGAQLQAQGVTAHDETGWKLSTTRAAAA
VMSALRACAHDAGSDQVLEWLKSGADGDALATQALEARLRREGVREWSAWCGQAARSEKP
QDIALLPFTEAVEGRRMAMARSRPLADWLRALRELLEAGEQWEPLAADMAGAKVIGALWL
DADAHGDDDEFPGGRHTLAEFTAWVRDVLEDASFVPPAGSEAPQVVVLPLHQLLGRAFGA
VVIPGCDDRRLPASPEPPGNWSAAQRAELGLPVRETLEAAQRSAWAAALCNPCCEVLWRQ
SDASGEPVRPSPLVQALQLDHALQMAADPRTAREVALQPTAYPTPSGALLPLRNISTSVY
EDLRRCPYRFFALRQLGLRSADELDAEVDKRDFGNWLHAVLGHFHEALKGAPTRDVAERV
AYISAAAERATREFGLSDAEFLPFAAAWPAVRDGYLQWLAGHEASGAVFAESEPWMEQPL
GSLQLVGRLDRIDRMPDGQAFVIDYKTESAAVTKERVKDPTEDTQLAFYAALVADDTLRA
AYVNVGEKSSGTQTVEQPVVVEARDALVAGILDDFTRIAQGAALPPLGEGAICDYCAARG
LCRKDFWEIEQPVLSSPTEGGPAQ
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaggccaccccgtccaggccctgtggtgcgaccccgccgacggcgtcgtcgcg
cgcatcgccggcgccatcgcgcagcgcgggctgcacgcggcgcgcaccgtggtgctggtg
ccgtatgcgcaattgatgggtgtggcccacgacatgtggtcgcgctgcggcggcccgggc
ttcgcgccgcgcttcgaaaccacgcgcaactgggcccgcagcgcgggcggcttcctgccc
acggggtacgacatcgcattcgacatggcgcgcgacctggtcacggcccaggcgctgctg
tcgcaggccggctttgccgcggagcgcttcgcgctcgccgggcgcgtggtcgagctggct
taccaattggcccccctcgcggctgctgccttgcctgaagtgcgcggcagcgaatgggca
cagcgggcggcccacgtcgccgaagcgggcagcgagtcggaatggttccgcatcgaaagc
gcgctgatccgtgtcgcggtggcctgggccgccaattcgggctacgccaccgatgtcctg
ctgcgcgacgccgtgcgtgcgcaggtcgatgcgctgatcgtgctcggaggcttccaagcc
gatccactcacccagacgctctgcaccttgtggggcgatcgcgccatccatctctctctg
gtgcccgcaaaccctgcggccaccacggcaggcgcgcatgtcgccgccgaccccgaggac
gaagcggaactggcggccgcctgcgtgctgcggcacctggccgcaggccgcgcgccggtg
gcgctgatcgcgaccgaccgggcgctcacgcggcgcatcggcgcgcagctccaggcgcag
ggtgtcacggcgcacgacgaaaccggctggaagctttccaccacgcgcgccgccgccgcc
gtgatgagcgcattgcgcgcctgtgcgcacgacgccggcagcgaccaggtgctcgaatgg
ctcaagagcggcgccgacggcgatgcgctcgccacccaggcgctcgaggcccggctgcgg
cgcgaaggtgtgcgcgagtggtccgcctggtgcggccaggccgcgcgcagcgaaaagccg
caggacatcgcgctgctgcctttcaccgaagccgtcgaaggccgccgcatggccatggcc
cgctcgcggcccctggccgactggctgcgcgccctgcgcgaattgctggaggccggggag
caatgggaaccgctcgcagccgacatggccggcgccaaggtgatcggcgcgttgtggctc
gatgccgatgcccatggcgacgacgatgaatttcccggcggacgccacacgctggccgag
ttcacggcctgggtgcgcgacgtgctcgaagatgcgagcttcgtgccgcccgccggcagc
gaggcgccgcaggtggtggtgctgccgctgcatcaattgctgggccgcgcgttcggcgcc
gtggtcatacccggttgcgacgaccggcgcctgcccgcgtcgcccgagccgcccggcaac
tggagcgccgcccagcgcgccgagctgggcctgcccgtgcgcgaaacgctcgaggccgcg
caacgctcggcctgggccgcggccttgtgcaatccatgctgcgaagtgctgtggcgccag
tccgatgcgagtggcgagccggtgcgccccagcccgctggtgcaggcgctgcagctcgac
cacgccttgcagatggcggcggacccgcgcacggcgcgcgaggtggcgctgcagccgacc
gcctacccgactccgtctggggcgctgctgccactgcgcaacatctccaccagcgtctac
gaagacctgcgccgctgcccctaccgtttcttcgcgctgcggcaactgggcttgcgcagt
gccgacgagctcgacgccgaggtcgataagcgcgacttcggcaactggctgcatgccgtg
ctgggccattttcacgaggcgctgaaaggggcgccaacccgcgatgtcgccgagcgcgtg
gcgtacatcagcgcggcggccgagcgcgccacgcgcgagttcggattgtccgatgccgag
ttcctgccgttcgccgcggcatggccagcagtgcgagacggctaccttcaatggcttgcc
ggacacgaggcgagcggcgccgtctttgccgaatccgaaccgtggatggagcagccgctg
ggcagcctgcaactggtcggccggctggaccgcatcgaccgcatgccggacggccaggcc
ttcgtgatcgactacaagaccgaatcggctgccgtgaccaaggagcgtgtgaaagacccg
accgaggacacgcagcttgccttctatgccgcgctggtggccgacgacacgctgcgcgcg
gcctacgtcaacgtcggcgagaaatcgtccggcacgcagaccgtcgagcagccggtggtg
gtggaggcacgcgatgcgctggtggcgggcatcctcgacgacttcacccgcatcgcccag
ggtgcggcgctgccgccgctgggagagggcgctatctgcgactactgcgcagcgcgcggg
ctttgcagaaaagatttctgggagatcgaacagcctgtactttcgtctccgaccgaggga
gggcctgcgcaatga
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