Variovorax paradoxus B4: VAPA_1c24650
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Entry
VAPA_1c24650 CDS
T02835
Name
(GenBank) putative DNA helicase, UvrD/REP-type
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
vpd
Variovorax paradoxus B4
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c24650
Enzymes [BR:
vpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VAPA_1c24650
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
VAPA_1c24650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
wHTH-HSP90_Na-assoc
Motif
Other DBs
NCBI-ProteinID:
AGU49565
UniProt:
T1XBN0
LinkDB
All DBs
Position
1:2621819..2625082
Genome browser
AA seq
1087 aa
AA seq
DB search
MNGAAYEHNGRHVAREAFYTVACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGESACE
PHEILAITFTKKAAGEMRERLDQWLEQFAERSPGELVRELVVRGVEPAAALAAVPRLQGL
YRRLLEGGRPVQFRTFHAWFAGLLRNAPLAVLRELGLPANYELLEDDAEARLRTWRPFFE
AVTADKEALADYYAVVATYGRSQTAKALGEALTRRVEFSLSDPASAVQHFSVLHPSLEGL
DEPTGALRGEQVRRRWLDRAAALGREANKTPQKAAEAIIDVFGVGEPPQESLAAALAHLR
KNFFVATEDRLNKNLQKYPAAQEAEAELQTLCAAQAQHAAWLYQQRMTRLTRLLISAFAE
VKRAHGWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNPLQWQALYGW
LSAYSGAGGKAPRVFIVGDPKQSIYRFRRAEPQVFIAAKKFVREGLGGELLNCDHTHRNA
RAVVGLVNQAMLAAQDADEFDGYRAHTTERNDEGELLKLPPIDRGAIDTTAEAAPADDGM
LHWRDSLVTPRVLPEEQLLQKECEQAARWVAQRIADGTPPRQIMVLARRRSRLSAMQDAL
RQRHIPVQQPEKNELHDAPEVQDVVALIDALVSPAHDLSLARALKSPLFGIGDEALVQLA
LRQREQPSSSWFALIQKGEGLPAELVQAGTRLKQWQSWLAALPPHDALDAIFHDGDVLAR
FGAAMPSAMRQSALANLRGLLAASLDIEGARFVTPYALVRALRAGGVRAPSVAVPDAVQL
LTVHGAKGLEADTVLMLDCDAPPPRAQTMGVLVEWKGSDSAPTRFVFLASEKTPPGCAAT
LLEEEQRARHREELNGLYVATTRARERLVLSSVQPARANEGSWWSRLESMCEPVEADEPL
LALPVETGAGSFSMKKMPVLAPAAKESPAIRKAAGATVDARAAAFGQAMHRLLEWALPGE
ALPPAHVRAAAREFMLDAQQARGAAVLAERIRAGAGAWAWDERMIDWHGNEVTLVHEGET
LRIDRLVRERASGAWWILDYKSAARPERDAELIAQMQRYRAAVQHAYPGASVRVAFLTGQ
GELVNLE
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgccgcctacgagcacaacggccggcacgtcgcgcgcgaggccttctacacc
gtcgcctgcgatccgcggcgctcggtggccgtcgaagcctgcgccggcgcgggcaagacc
tggatgctggtgtcgcgcatcttgcgcgcgctgctcgaagagggcgagtccgcgtgcgag
ccgcacgagatcctggccatcaccttcaccaagaaagccgccggcgagatgcgcgagcgg
ctcgaccagtggctcgagcagttcgccgagcgcagccccggggagctggtgcgcgaactc
gtcgttcgcggtgtcgagcccgcagccgcgctcgctgccgtgccgcgcctgcaaggcctc
tacaggcgcttgctcgaaggcggcaggccggtgcagttccgcaccttccacgcctggttt
gcgggcctgctgcgcaacgcgccgctggcggtgctgcgcgaactcggcctgcccgcgaac
tatgagcttctcgaagacgatgccgaggcgcggctgcgcacctggcgccccttcttcgag
gccgtgacggccgacaaggaggctctggccgactactacgccgtggtcgccacctatggc
cgttcgcagaccgccaaggctctcggcgaagcgctcacgcgccgggtcgagttctcgctg
tccgacccggcgtcggcggtgcagcacttcagcgtgcttcatccttcgctcgagggactg
gacgaaccgaccggcgcactgcgcggcgagcaggtccggcgccgctggctggaccgtgcc
gccgcactcggccgcgaagccaacaagacgccgcagaaagcggccgaggcgatcatcgac
gtgttcggtgttggcgaaccgccgcaggagtcgctcgctgccgcgctggcgcacctgcgc
aagaacttcttcgtcgccaccgaagaccgcctcaacaagaacctgcagaaatatcccgcc
gcgcaagaagccgaggccgagctccagacgctctgcgccgcgcaggcccagcacgcggcc
tggctctaccagcagcgcatgacgcgcctcacgcgcctcctgatctccgccttcgcagag
gtcaagcgcgcccatggctgggtcgacatgaacgacgtcgaacaggccgcgcaattgctg
ctgggccagtcggcgctgtcgggctgggtgcaggaacggctcgatgcacgcatcgcgcac
ctgctgatcgacgagttccaggacaccaatccgctgcaatggcaggcgctctacggctgg
ctcagcgcctacagcggcgcgggcggcaaggcaccgcgcgtcttcatcgtgggcgacccg
aagcagagcatctaccgcttccgccgcgccgagccgcaggtgttcatcgccgcgaagaaa
ttcgtgcgcgaagggctgggcggtgagctgctcaattgcgatcacacccaccgcaacgcg
cgcgcggtggtcggcctggtcaaccaggcgatgctggccgcgcaggatgccgacgagttc
gacggctaccgcgcgcacaccaccgagcgcaacgacgaaggcgagctgctcaagctcccg
cccatcgatcgcggcgccatcgatacgacagcggaggccgcgcccgcggacgacggcatg
ctgcactggcgcgacagcctcgtcaccccgcgggtgctgcccgaagagcagttgctgcaa
aaggaatgcgagcaggccgcgcgctgggtcgcgcagcgcattgccgatggcacgccgccg
cgccagatcatggtgctggcgcgccgccgcagccggctgtccgccatgcaggacgcgctg
cgccagcgccacatcccggtgcagcagcccgagaagaacgagctgcacgatgcacccgaa
gtgcaggacgtggtggcgttgatcgatgcgctggtgtcccccgcgcacgacctctcgctg
gcgcgcgcgctcaagtcgcccctgttcggcatcggcgatgaggcgctggtgcaactggcg
ctgcgccagcgcgaacaaccttcgtcgagctggttcgcgttgatccagaaaggcgagggc
ctgccggcggaactggtccaggccggcaccaggctcaagcaatggcagagctggctcgcc
gcattgccgccgcacgacgcgctcgatgcgatcttccacgacggcgatgtgctggccagg
ttcggcgccgccatgccctccgccatgcgccagagcgcgctggccaatctgcgcgggctg
ctggcggcctcgctcgacatcgagggtgcgcgctttgtcacgccctatgcgctggtgcgc
gcgctgcgtgcgggcggcgtcagggcgccatccgtcgccgtgcccgatgcggtgcagctc
ctgaccgtgcacggcgccaagggcctcgaggcagacaccgtgctcatgctcgactgcgac
gcaccaccgccgcgagcccagaccatgggcgtgctggtcgaatggaaaggcagcgacagc
gcgcccacccgcttcgtgttcctggcaagcgagaagaccccgccgggctgtgcggctacg
ctgctcgaggaagagcagcgcgcgcgccatcgcgaggagctcaacggcctctacgtcgcg
accacgcgggcgcgcgagcgcctcgtgctgtcgtcggtgcagccggcccgggccaacgag
ggcagctggtggtcgcggctcgaatcgatgtgcgagcctgtcgaagccgatgagccgctg
ctcgcgctgccggtggagaccggggccggcagtttctcgatgaagaagatgcccgtcctc
gcacctgcggccaaggaatcaccagccatcaggaaagctgctggcgctaccgtcgacgcg
cgggctgcagccttcggccaggcgatgcaccggctgctcgaatgggccctgccgggcgag
gcgctgccgcccgcgcatgtgcgcgccgcggcccgtgagttcatgctcgacgcgcaacag
gcgcgcggcgcggccgtgctggccgagcgcattcgcgcgggggccggcgcatgggcgtgg
gatgagcgcatgatcgactggcacggcaacgaagtgacgctggtccatgaaggcgagacg
ctgcgcatcgaccggctggtgcgcgagcgcgccagcggtgcctggtggatcctcgactac
aaatccgctgcgcgtcccgaacgggacgcggaattgatcgcacagatgcagcgctaccgc
gcggcggtgcaacatgcctatcccggtgcctcggtgcgcgtcgcgttcctgaccgggcag
ggcgaactggtaaatctcgaatga
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