Variovorax paradoxus B4: VAPA_1c24690
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Entry
VAPA_1c24690 CDS
T02835
Symbol
dnaX
Name
(GenBank) DNA polymerase III DnaX
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03030
DNA replication
vpd03430
Mismatch repair
vpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VAPA_1c24690 (dnaX)
03430 Mismatch repair
VAPA_1c24690 (dnaX)
03440 Homologous recombination
VAPA_1c24690 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpd03032
]
VAPA_1c24690 (dnaX)
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c24690 (dnaX)
Enzymes [BR:
vpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VAPA_1c24690 (dnaX)
DNA replication proteins [BR:
vpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VAPA_1c24690 (dnaX)
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VAPA_1c24690 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
DNA_pol3_tau_5
AAA
RuvB_N
AAA_22
AAA_18
AAA_14
AAA_30
Rad17
AAA_19
AAA_5
nSTAND3
AAA_assoc_2
AAA_16
SKI
AAA_2
TsaE
AAA_28
Herpes_Helicase
Torsin
Motif
Other DBs
NCBI-ProteinID:
AGU49569
UniProt:
T1XB88
LinkDB
All DBs
Position
1:2628400..2630256
Genome browser
AA seq
618 aa
AA seq
DB search
MSYLVLARKFRPKTFGEMVGQGHVVQALENALTTQRLHHAYLFTGTRGVGKTTVSRILAK
SLNCQGPDGQGGITATPCGVCQACKDIDSGRFVDYTELDAASNRGVDEVQSLLEQAVYKP
VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL
RPMAPETVLEHLTSVLQTEQVPAEPQALRLLARAARGSMRDALSLTDQAIAFGNGELLET
GVRQMLGSVDRGHVFKLIEALAQGDGKTVVDTSEALRRDGMSAASTLEEMTAVLQAMAVL
QAVPSRVESADSATDPDAADTARLASLMPADETHLLYSLCLHGRGELGLAPDEYAALTMV
LLRLLAFKPSNAAASPASTEKKTLNEASRAVSVPVAAAPARGTTEIPASPASVSVAAPVP
QPTPAPAGQRLAVVSEPVRPGGPRPSAAAGPSAAAEAPRVLAVPMRVQPPPSQRDAPRSD
EQRGPAPPIPPSEDGDFWHATVTQMIAAESINALARELALQSQLVARDVDQWILRVEREL
LNQPSAREKLTDALAALGHGVKLAIEIGGVVDSPARRNKQAADERQRLAEEAIRSDPEVQ
MLMREFDAKIVPGTLKPA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatctcgtgctcgctcgcaagttccgtccgaaaaccttcggtgagatggtcggt
caggggcacgtggtgcaggcgctcgagaacgcactgaccacgcagcgcctgcatcacgcc
tatcttttcaccggaacgcggggcgtgggcaagaccaccgtctcccgcattctggccaag
tcgctcaactgccagggcccggacgggcagggcggtatcactgccacgccgtgcggggtg
tgccaggcctgcaaggacatcgattcgggccgcttcgtcgactacaccgagctggacgcg
gcatcgaaccgcggcgtggacgaggtgcagtctctgctcgagcaggcggtctacaagccg
gtgcaggggcgcttcaaggtcttcatgatcgacgaagtgcacatgctcaccaacaccgcg
ttcaacgcgatgctgaagacgctcgaagagccgccggaatacctcaagttcgttctcgcc
accaccgatccgcagaaggtgccggtcacggtgctgtcgcgctgcctgcagttcaacctg
cggccgatggcgcccgagacggtgctggagcacctcacgagcgtgctgcagaccgaacag
gtaccggccgaaccgcaggcgctgcgcttgctggcgcgcgcggcgcgcggctcgatgcgc
gacgccctctcgctcaccgaccaggccattgcgttcggcaacggcgaactgctcgaaacc
ggcgtgcgccagatgctcggcagcgtggaccgcggccatgtgttcaagctgatagaggcg
ctggcgcagggcgacggcaagacggtggtcgacacctccgaggcgctgcggcgcgacggc
atgtcggccgcttccacgctggaagaaatgacggcggtgctgcaggccatggccgtgctg
caggcggtgccctcgcgggtggagtcggccgattccgccaccgaccccgacgcggccgat
acggcgcgcctcgcgtcgctgatgcctgccgatgaaacccacctgctctacagtctgtgc
ctgcacgggcgtggcgaactgggcctggcgcccgatgagtacgccgcgctgaccatggtg
ctgttgcggcttttggccttcaagccttccaacgcggccgcctccccggcctccacggaa
aaaaaaactctgaatgaagcctccagggcggtttcggtcccggtggccgcagcgccggcc
cggggcacgacggagatccccgcatcgccggcttcggtttcggtcgccgcaccggtgcct
caacccaccccggcgccggcaggccagcgtctggccgtggtcagcgagcccgtgcggccg
ggtgggcccaggccttctgccgcggccgggccctcggcggctgccgaggcgcccagggtg
cttgccgttcccatgcgcgtccagccgccgccgagccagcgggacgcgccgcgatccgac
gagcagcgcggtccggcgccacccattccgcccagcgaggacggcgacttctggcacgcc
acggtcacgcagatgatcgcggccgagagcatcaacgccctggcgcgcgaacttgcgctc
cagtcgcagctggtggcgcgcgatgtcgaccagtggatacttcgcgtggaacgcgaattg
ctcaaccagccttctgcccgcgaaaagctcaccgatgcattggccgcgctgggccatggc
gtgaagctcgccattgaaatcggcggcgtggtcgacagccccgcgcgccgcaacaagcag
gctgccgacgagcgccagcgcctggctgaggaggccattcgcagcgatcccgaagtgcag
atgctgatgcgggaattcgatgcgaagatcgtgcctggaacactgaagccggcctga
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