Variovorax paradoxus B4: VAPA_1c26290
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Entry
VAPA_1c26290 CDS
T02835
Name
(GenBank) putative fatty acid oxidation complex, subunit alpha
KO
K07516
3-hydroxyacyl-CoA dehydrogenase [EC:
1.1.1.35
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00071
Fatty acid degradation
vpd00362
Benzoate degradation
vpd00650
Butanoate metabolism
vpd01100
Metabolic pathways
vpd01120
Microbial metabolism in diverse environments
vpd01200
Carbon metabolism
vpd01212
Fatty acid metabolism
Module
vpd_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
VAPA_1c26290
09103 Lipid metabolism
00071 Fatty acid degradation
VAPA_1c26290
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
VAPA_1c26290
Enzymes [BR:
vpd01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
VAPA_1c26290
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
3HCDH
ECH_1
ECH_2
NAD_binding_2
F420_oxidored
Motif
Other DBs
NCBI-ProteinID:
AGU49727
UniProt:
T1X9X0
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All DBs
Position
1:2788164..2790269
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AA seq
701 aa
AA seq
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MTAEYKVLGDVAVITLTNPPVNGLGFSTRIGITDGLAKANADDAVKAIVITGAGKAFSGG
ADIKEFGTPKALQEPNLLSVILALEASPKPIVAAIHSVCMGGGLELALGCHYRVAAPGTS
IALPEVKLGLIPGAGGTQRLPRVLGVETALNMIVSGEPVKSELLASLPGQKLFDKLAASP
ESVFEEAVAFAKGVAGKTGDALPLVRNLPCKHPQGDAYFQFAKNMVGGMSKNYPAPLKCV
DAVQAATRMKFDEGMAEERRIFTALMFTPESLALRHLFMAERAASKIPDVPDDTPKREIK
SVGVIGAGTMGGGISMNFLNAGIPVKILEMKQEALDRGIATIRKNYESQVKKGKLKQDKY
EQRMALLSTTLDYNGLKDADLIIEAVFEELGVKEKVFKELDRVARKGAILASNTSTLDVD
KIAAFTQRPQDVVGMHFFSPANVMKLLEVVRGKETAKDVLATVMDIGKKIKKTAVVSGVC
DGFIGNRMIEQYSRQAGFLLDEGATPQQVDKAVEKFGFAMGPFRMGDLAGNDIGWAIRKR
RAVEYPDMKYSRTADKLCELGRFGQKTGAGWYDYQAGKRDAIPSELVNKMIEDHRKELGI
TPRKISDEEIVQRLVYALVNEGAHILEDGIASKSGDIDMVYLTGYGFPIWRGGPMHYASQ
VGLYNVAETMKRFARNPRDDAEFWQPAPLIQKLAAEGKQFG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgaatacaaagtgctcggcgatgtcgccgtgatcacactgaccaaccctccg
gtcaacggtctcggtttctcgacccgcatcggcatcaccgatgggctcgcgaaggccaat
gccgatgatgccgtcaaggccatcgtcatcacgggcgccggcaaggcgttctcgggcggt
gcggacatcaaggagttcggcacacccaaggcgctgcaggagcccaacctgctgagcgtg
atcctcgcgctcgaggcttcgcccaagccgatcgtcgcggcgatccattcggtgtgcatg
ggcggcggcctcgaattggcgctcggctgccactaccgcgtggcggcgcccggcaccagc
attgcactacctgaggtcaagctgggcctgatccccggtgccggcggcacgcagcgcctg
ccgcgcgtgctgggcgtggagaccgcgctcaacatgatcgtgagcggcgagcccgtcaag
agcgaactgctcgccagcctgccgggccagaagctgttcgacaagctcgcggcctcgccc
gaatcggtgttcgaggaagccgttgcattcgccaagggcgtcgcgggcaagaccggcgac
gcattgccgctggtgcgcaacctgccgtgcaagcacccgcagggcgatgcctacttccag
ttcgcgaagaacatggtcggcggcatgtcgaagaactatccggcgccgctcaagtgcgtc
gatgcggtgcaggccgccaccaggatgaagttcgacgaaggcatggccgaagagcgccgg
atcttcaccgcgctgatgttcacgcccgaatcgctggcgctgcgccacctgttcatggcc
gagcgcgcggcctccaagatccccgatgtgcccgacgacacgcccaagcgagagatcaag
tcggtgggcgtgatcggcgccggcaccatgggcggcggcatctcgatgaacttcctgaat
gcgggcattcccgtgaagattctcgagatgaagcaggaagcgctcgaccgcggcattgcg
accatccgcaagaactacgaatcccaggtcaagaagggcaagctcaagcaggacaagtac
gagcagcgcatggcgcttttgagcaccacgctcgactacaacggcctgaaggatgccgac
ctgatcatcgaagcggtgttcgaggaactcggcgtgaaggagaaggtgttcaaggaactc
gaccgcgtggccaggaagggcgccatcctggcttccaacacctcgacgctcgacgtcgac
aagatcgcggctttcactcagcgcccgcaggacgtggtcggcatgcacttcttcagcccg
gccaacgtgatgaagctgctcgaagtggtgcgcggcaaggaaacggccaaggacgtcctg
gcaaccgtcatggacattggcaagaagatcaagaagacggccgtggtctcgggcgtgtgc
gacggcttcatcggcaaccgcatgatcgagcagtactcgcgccaggcaggcttcctgctg
gacgagggtgccacgccgcagcaggtcgacaaggccgtcgagaagttcggttttgccatg
ggcccgttccgcatgggcgacctggccggcaacgacatcggctgggcgattcgcaagcgc
cgcgccgtggaatacccggacatgaagtacagccgcacggccgacaagctctgcgaactg
ggccgcttcggccagaagaccggggcgggctggtacgactaccaggccggcaagcgcgat
gcgattccatcggagctggtcaacaagatgatcgaggaccaccgcaaggaactgggcatc
acgccgcgcaagatttccgatgaagagatcgtgcagcgcctggtgtatgcgctcgtcaac
gaaggcgcacacatcctcgaggatggcattgcctcgaagtccggcgacatcgacatggtg
tacctcaccggctacggcttcccgatctggcgcggcggcccgatgcactacgcatcgcag
gtcggcttgtacaacgtggccgaaaccatgaagcgctttgccaggaacccgcgcgacgat
gccgagttctggcagcccgcgccgctgatccagaagctggcggccgaaggcaagcagttc
ggctga
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