Variovorax paradoxus B4: VAPA_1c27450
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Entry
VAPA_1c27450 CDS
T02835
Name
(GenBank) uracil-DNA glycosylase family protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VAPA_1c27450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpd03400
]
VAPA_1c27450
Enzymes [BR:
vpd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
VAPA_1c27450
DNA repair and recombination proteins [BR:
vpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VAPA_1c27450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AGU49842
UniProt:
T1XA86
LinkDB
All DBs
Position
1:2913463..2914176
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AA seq
237 aa
AA seq
DB search
MSHRNEATAALKALSVATDACRECPLGAHATQSVFGEGPVGAVLMVVGEQPGDKEDLVGR
PFVGPAGKLFDRAVAELGWSRENLYVTNAVKHFKYELRGKRRMHKTPGQREAQACHHWLE
SEMELVQPRAYVALGATAARSLLGRPVAVMKERGQWIEEAATGRRVLVTLHPSALLRGDP
LQREAAWKAWLEDLSVASDLMKKAAAKRPAEKQPAAKKPAARPAASHVRRRVRMVME
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccatcgcaacgaggccactgctgccctgaaagcgctcagcgtggcgaccgatgcc
tgccgcgagtgcccgctgggagcgcacgccacccaatcggtcttcggcgaaggtccggtc
ggcgcggtgctgatggtggtgggcgagcagccgggcgacaaggaggacctggtgggccgc
cctttcgtcggccccgccggcaagctgttcgaccgcgcggtagcagaactcggctggtcg
cgcgagaacctctacgtgaccaatgcggtgaagcatttcaagtacgagttgcgcggcaag
cggcgcatgcacaagactcctggccaacgtgaggcgcaggcctgccaccactggctcgaa
agcgagatggaactcgtgcagccgcgcgcctatgtggcgctcggcgccacggccgcacgc
tcactgctcggccgccccgttgcggtgatgaaggagcgcggccaatggatcgaggaagca
gcgaccggccgccgcgtgctggtcacgctgcatccctccgccctgctgcgcggcgatcct
ttgcagcgcgaagccgcgtggaaagcctggctcgaggacctgtcggtggcttccgacctg
atgaaaaaagccgcggccaaacgcccggccgagaaacagcctgccgcaaaaaagcctgcg
gcgaggcccgccgcaagtcatgtgcgccgccgcgtgcgcatggtgatggaatag
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